DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics - Test2 - elhamkhani - TriplyDB

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

http://www.wikidata.org/entity/Q29615322

about

Identification of novel targets for miR-29a using miRNA proteomics Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus Cytoskeletal components of an invasion machine--the apical complex of Toxoplasma gondii Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis Proteins interacting with cloning scars: a source of false positive protein-protein interactions ALKBH4-dependent demethylation of actin regulates actomyosin dynamics.Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription Targeted proteomic analysis of 14-3-3 sigma, a p53 effector commonly silenced in cancer Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2 Methylation of the retinoblastoma tumor suppressor by SMYD2 Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom)Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation.Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT)FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnover Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases DDA3 recruits microtubule depolymerase Kif2a to spindle poles and controls spindle dynamics and mitotic chromosome movement The deubiquitinating enzyme BAP1 regulates cell growth via interaction with HCF-1.The evolutionarily conserved longevity determinants HCF-1 and SIR-2.1/SIRT1 collaborate to regulate DAF-16/FOXO The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes Gene duplication and neofunctionalization: POLR3G and POLR3GL Proteomic mapping of ER-PM junctions identifies STIMATE as a regulator of Ca²⁺ influx FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling Shotgun identification of protein modifications from protein complexes and lens tissue The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions The role of GRASP55 in Golgi fragmentation and entry of cells into mitosis Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments Implication of a novel multiprotein Dam1p complex in outer kinetochore function PatternLab for proteomics: a tool for differential shotgun proteomics BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis Mechanism of carbamate inactivation of FAAH: implications for the design of covalent inhibitors and in vivo functional probes for enzymes The Yeast Resource Center Public Data Repository A comprehensive and scalable database search system for metaproteomics Serum- and Glucocorticoid-Inducible Kinase-1 (SGK-1) Plays a Role in Membrane Trafficking in Caenorhabditis elegans The specification and global reprogramming of histone epigenetic marks during gamete formation and early embryo development in C. elegans

P2860

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P2860

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

http://www.wikidata.org/entity/Q29615322

description

2002 nî lūn-bûn

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2002 թուականին հրատարակուած գիտական յօդուած

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2002 թվականին հրատարակված գիտական հոդված

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2002年の論文

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2002年論文

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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DTASelect and Contrast: tools ...... ations from shotgun proteomics

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P2093

John R Yates

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P2860

Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes

Selective degradation of ubiquitinated Sic1 by purified 26S proteasome yields active S phase cyclin-Cdk.

Mgm101p is a novel component of the mitochondrial nucleoid that binds DNA and is required for the repair of oxidatively damaged mitochondrial DNA

Coronin promotes the rapid assembly and cross-linking of actin filaments and may link the actin and microtubule cytoskeletons in yeast.

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

Direct analysis of protein complexes using mass spectrometry

Protein sequencing by tandem mass spectrometry.

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21-26

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10.1021/PR015504Q

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1

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W. Hayes McDonald

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10849559

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