FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin - Test2 - elhamkhani - TriplyDB

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

http://www.wikidata.org/entity/Q24673476

about

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project A user's guide to the encyclopedia of DNA elements (ENCODE)Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti Prospero-related homeobox 1 (Prox1) functions as a novel modulator of retinoic acid-related orphan receptors α- and γ-mediated transactivation HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter Pioneer transcription factors: establishing competence for gene expression Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers Old cells, new tricks: chromatin structure in senescence Next-Generation Sequencing in the Understanding of Kaposi's Sarcoma-Associated Herpesvirus (KSHV) Biology Defining cell types and states with single-cell genomics Architectural and Functional Commonalities between Enhancers and Promoters High-throughput sequencing for biology and medicine Large-scale chromatin organization: the good, the surprising, and the still perplexing Identifying novel transcriptional components controlling energy metabolism Regulation of chromatin structure in the cardiovascular system Epigenetics, chromatin and genome organization: recent advances from the ENCODE project Transcriptional Dynamics at Brain Enhancers: from Functional Specialization to Neurodegeneration Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation Hematopoietic Signaling Mechanism Revealed from a Stem/Progenitor Cell Cistrome Histone H3.3 maintains genome integrity during mammalian development PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls Plasmodium falciparum Nucleosomes Exhibit Reduced Stability and Lost Sequence Dependent Nucleosome Positioning RORγ directly regulates the circadian expression of clock genes and downstream targets in vivo Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture pENCODE: a plant encyclopedia of DNA elements A common set of DNA regulatory elements shapes Drosophila appendages A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons Microfluidics for genome-wide studies involving next generation sequencing.In Silico Functional Annotation of Genomic Variation.Nuclear scaffold attachment sites within ENCODE regions associate with actively transcribed genes.Understanding transcriptional regulation by integrative analysis of transcription factor binding data.Dynamic estrogen receptor interactomes control estrogen-responsive trefoil Factor (TFF) locus cell-specific activities.Motif-based analysis of large nucleotide data sets using MEME-ChIP.Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.Identifying peaks in *-seq data using shape information.

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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

http://www.wikidata.org/entity/Q24673476

description

2007 nî lūn-bûn

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2007 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2007 թվականի հունիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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FAIRE (Formaldehyde-Assisted I ...... elements from human chromatin

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Genome Research

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FAIRE (Formaldehyde-Assisted I ...... elements from human chromatin

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Jason D Lieb

http://www.w3.org/2001/XMLSchema#string

Jonghwan Kim

http://www.w3.org/2001/XMLSchema#string

Paul G Giresi

http://www.w3.org/2001/XMLSchema#string

Ryan M McDaniell

http://www.w3.org/2001/XMLSchema#string

Vishwanath R Iyer

http://www.w3.org/2001/XMLSchema#string

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GENCODE: producing a reference annotation for ENCODE

Genome-wide analysis of mRNA lengths in Saccharomyces cerevisiae

The UCSC Genome Browser Database: update 2006

The Vertebrate Genome Annotation (Vega) database

Cluster analysis and display of genome-wide expression patterns

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

The landscape of histone modifications across 1% of the human genome in five human cell lines

Global nucleosome occupancy in yeast

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

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877-85

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170130

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10.1101/GR.5533506

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17

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2007-06-01T00:00:00Z

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6621452

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17179217

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1891346

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