PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls - Test2 - elhamkhani - TriplyDB

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

http://www.wikidata.org/entity/Q28305773

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A user's guide to the encyclopedia of DNA elements (ENCODE)Evaluation of algorithm performance in ChIP-seq peak detection Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets Practical guidelines for the comprehensive analysis of ChIP-seq data Identification and characterization of Hoxa9 binding sites in hematopoietic cells Insights from genomic profiling of transcription factors Genomic views of STAT function in CD4+ T helper cell differentiation A scaling normalization method for differential expression analysis of RNA-seq data Blood pressure loci identified with a gene-centric array The transcriptional foundation of pluripotency Uncovering transcription factor modules using one- and three-dimensional analyses Next-generation sequencing: a powerful tool for the discovery of molecular markers in breast ductal carcinoma in situ Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans The BTB-zinc finger transcription factor abrupt acts as an epithelial oncogene in Drosophila melanogaster through maintaining a progenitor-like cell state Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response Wnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approaches Integrating Epigenomics into the Understanding of Biomedical Insight ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia ENCODE data in the UCSC Genome Browser: year 5 update CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing Tcf7 is an important regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line Genome-wide signatures of transcription factor activity: connecting transcription factors, disease, and small molecules Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project High resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technology PeakRegressor identifies composite sequence motifs responsible for STAT1 binding sites and their potential rSNPs PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data Quantitative analysis of ChIP-seq data uncovers dynamic and sustained H3K4me3 and H3K27me3 modulation in cancer cells under hypoxia Widespread transcription at neuronal activity-regulated enhancers GREAT improves functional interpretation of cis-regulatory regions ChIP-seq: advantages and challenges of a maturing technology MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework.Features that define the best ChIP-seq peak calling algorithms Epigenetic methodologies for behavioral scientists.Maternal separation with early weaning: a rodent model providing novel insights into neglect associated developmental deficits A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.Nuclear factor I revealed as family of promoter binding transcription activators.Predictive models of gene regulation from high-throughput epigenomics data.A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples.ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.

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P2860

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

http://www.wikidata.org/entity/Q28305773

description

2009 nî lūn-bûn

@nan

2009 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի հունվարին հրատարակված գիտական հոդված

@hy

2009年の論文

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2009年論文

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2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

@wuu

name

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@ast

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@en

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@nl

type

label

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@ast

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@en

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@nl

prefLabel

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@ast

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@en

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

@nl

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Nature Biotechnology

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

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Ghia Euskirchen

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Michael Snyder

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Nicholas Carriero

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Raymond K Auerbach

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Robert Bjornson

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Theodore Gibson

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Zhengdong D Zhang

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Mapping and sequencing of structural variation from eight human genomes

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Paired-end mapping reveals extensive structural variation in the human genome

The human genome browser at UCSC

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization

An analysis of the feasibility of short read sequencing

Genome-wide location and function of DNA binding proteins

Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

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66-75

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1010364

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10.1038/NBT.1518

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1

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27

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Mark Bender Gerstein

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2009-01-01T00:00:00Z

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23720332

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19122651

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2924752

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