Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics - Test2 - elhamkhani - TriplyDB

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics

http://www.wikidata.org/entity/Q24680567

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Non-coding RNA prediction and verification in Saccharomyces cerevisiae Identification and classification of conserved RNA secondary structures in the human genome Partition function and base pairing probabilities of RNA heterodimers Fast and reliable prediction of noncoding RNAs MSARI: multiple sequence alignments for statistical detection of RNA secondary structure Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome Structural RNAs of known and unknown function identified in malaria parasites by comparative genomics and RNA analysis Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Global analysis of yeast RNA processing identifies new targets of RNase III and uncovers a link between tRNA 5' end processing and tRNA splicing.A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs.A Review of Computational Methods for Finding Non-Coding RNA Genes Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling A high-resolution map of transcription in the yeast genome.Computational RNomics of drosophilids.Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes.Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins Conserved secondary structures in Aspergillus.Fisher: a program for the detection of H/ACA snoRNAs using MFE secondary structure prediction and comparative genomics - assessment and update Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species Computational prediction of novel non-coding RNAs in Arabidopsis thaliana Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines The small nucleolar ribonucleoprotein (snoRNP) database.Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments.From structure prediction to genomic screens for novel non-coding RNAs.In Silico Prediction of Evolutionarily Conserved GC-Rich Elements Associated with Antigenic Proteins of Plasmodium falciparum.Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway Structures of naturally evolved CUP1 tandem arrays in yeast indicate that these arrays are generated by unequal nonhomologous recombination Direct evolution of genetic robustness in microRNA.Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.A comparative genome-wide study of ncRNAs in trypanosomatids.Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs.Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery.De novo prediction of structured RNAs from genomic sequences.Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes.Visualization of multiple genome annotations and alignments with the K-BROWSER.The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.

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P2860

Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics

http://www.wikidata.org/entity/Q24680567

description

2003 nî lūn-bûn

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2003 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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Nucleic Acids Research

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Computational identification o ...... visiae by comparative genomics

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P2860

Non–coding RNA genes and the modern RNA world

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes.

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

Noncoding RNA genes identified in AT-rich hyperthermophiles

A small nucleolar guide RNA functions both in 2'-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA

Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA.

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

Noncoding RNA gene detection using comparative sequence analysis

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4119-28

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scholarly article

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10.1093/NAR/GKG438

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14

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31

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John P. McCutcheon

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Saccharomyces cerevisiae

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