Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea - Test2 - elhamkhani - TriplyDB

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

http://www.wikidata.org/entity/Q24550436

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Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: evolutionary conservation of core proteins and structural predictions for methylation-guide box C/D snoRNPs throughout the domain Eucarya.A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis.Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins 2'-O-methylation of the wobble residue of elongator pre-tRNA(Met) in Haloferax volcanii is guided by a box C/D RNA containing unique features Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn.Sequence Analysis and Comparative Study of the Protein Subunits of Archaeal RNase P Small RNAs for defence and regulation in archaea H/ACA small nucleolar RNA pseudouridylation pockets bind substrate RNA to form three-way junctions that position the target U for modification Structure and Functional Studies of the CS Domain of the Essential H/ACA Ribonucleoparticle Assembly Protein SHQ1 Analysis of a Critical Interaction within the Archaeal Box C/D Small Ribonucleoprotein Complex Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops The molecular recognition of kink-turn structure by the L7Ae class of proteins Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism.Analysis of sequence and structural features that identify the B/C motif of U3 small nucleolar RNA as the recognition site for the Snu13p-Rrp9p protein pair Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states Structure-function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation.Alternative processing as evolutionary mechanism for the origin of novel nonprotein coding RNAs.Small nucleolar RNA clusters in trypanosomatid Leptomonas collosoma. Genome organization, expression studies, and the potential role of sequences present upstream from the first repeated cluster.The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus.Combined experimental and computational approach to identify non-protein-coding RNAs in the deep-branching eukaryote Giardia intestinalis LeARN: a platform for detecting, clustering and annotating non-coding RNAs Compensatory mutations in the L30e kink-turn RNA-protein complex.Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability.The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification.Experimental identification and characterization of 97 novel npcRNA candidates in Salmonella enterica serovar Typhi.Ribonuclease P: the evolution of an ancient RNA enzyme.RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi.Ribosomal protein L7Ae is a subunit of archaeal RNase P.

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Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

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2003 nî lūn-bûn

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2003 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2003年の論文

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Nucleic Acids Research

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Alexander Hüttenhofer

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Inna V Tchirkova

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Jean-Pierre Bachellerie

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Jürgen Brosius

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Thean Hock Tang

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P2860

Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs

The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation

A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP

Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5' stem-loop of U4 snRNA

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

Noncoding RNA genes identified in AT-rich hyperthermophiles

The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA.

The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: identification of SBP2 amino acids important to SECIS RNA binding.

Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

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869-877

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434759

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10.1093/NAR/GKG175

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3

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31

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Timofey S Rozhdestvensky

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2003-02-01T00:00:00Z

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277487631

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12560482

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149196

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