A consensus view of protein dynamics - Test2 - elhamkhani - TriplyDB

A consensus view of protein dynamics

A consensus view of protein dynamics

http://www.wikidata.org/entity/Q24682188

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Molecular dynamics simulations: advances and applications Molecular Basis of the Acceleration of the GDP-GTP Exchange of Human Ras Homolog Enriched in Brain by Human Translationally Controlled Tumor Protein The structure of human 4F2hc ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane Computational design of an endo-1,4- -xylanase ligand binding site Hybrid molecular mechanics/coarse-grained simulations for structural prediction of G-protein coupled receptor/ligand complexes Exploring early stages of the chemical unfolding of proteins at the proteome scale CABS-flex predictions of protein flexibility compared with NMR ensembles.Comparison of molecular dynamics and superfamily spaces of protein domain deformation.Splitting statistical potentials into meaningful scoring functions: testing the prediction of near-native structures from decoy conformations.Structure prediction and analysis of neuraminidase sequence variants.Fine grained sampling of residue characteristics using molecular dynamics simulation.Generation of a consensus protein domain dictionary.Effects of point mutations on protein structure are nonexponentially distributed.CABS-flex: Server for fast simulation of protein structure fluctuations Toward an atomistic description of the urea-denatured state of proteins.In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation.Observing the overall rocking motion of a protein in a crystal Designing and defining dynamic protein cage nanoassemblies in solution.Stability of the core domain of p53: insights from computer simulations.Secondary structure propensities in peptide folding simulations: a systematic comparison of molecular mechanics interaction schemes.Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations.X-Pol Potential: An Electronic Structure-Based Force Field for Molecular Dynamics Simulation of a Solvated Protein in Water.Dynameomics: a comprehensive database of protein dynamics.Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure.Toward a consensus view of duplex RNA flexibility Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case.Visualizing transient dark states by NMR spectroscopy.Genome and proteome annotation: organization, interpretation and integration.Hydrophobic collapse of trigger factor monomer in solution Molecular dynamics study of naturally existing cavity couplings in proteins.Importance of long-time simulations for rare event sampling in zinc finger proteins Validation of previous computer models and MD simulations of discoidal HDL by a recent crystal structure of apoA-I.Towards a molecular dynamics consensus view of B-DNA flexibility Molecular dynamics simulation of triclinic lysozyme in a crystal lattice.Exploring the suitability of coarse-grained techniques for the representation of protein dynamics.Curvature dynamics of alpha-synuclein familial Parkinson disease mutants: molecular simulations of the micelle- and bilayer-bound forms.Prediction and validation of protein intermediate states from structurally rich ensembles and coarse-grained simulations.Structural analysis of protein dynamics by MD simulations and NMR spin-relaxation.Identification of Hot Spots in Protein Structures Using Gaussian Network Model and Gaussian Naive Bayes.Molecular basis for Bcl-2 homology 3 domain recognition in the Bcl-2 protein family: identification of conserved hot spot interactions.

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A consensus view of protein dynamics

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2007 nî lūn-bûn

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2007年の論文

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A consensus view of protein dynamics

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A consensus view of protein dynamics

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Adam Hospital

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Alberto Pérez

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Carles Ferrer-Costa

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Jordi Camps

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Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

PROCHECK: a program to check the stereochemical quality of protein structures

Comparison of simple potential functions for simulating liquid water

Contribution of surface salt bridges to protein stability

All-atom empirical potential for molecular modeling and dynamics studies of proteins

Dali: a network tool for protein structure comparison

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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