A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3 - Test2 - elhamkhani - TriplyDB

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

http://www.wikidata.org/entity/Q24605760

about

An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits Structural classification of zinc fingers: survey and summary.A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary A consensus view of protein dynamics S4: structure-based sequence alignments of SCOP superfamilies ADDA: a domain database with global coverage of the protein universe Estimates of statistical significance for comparison of individual positions in multiple sequence alignments Improving the precision of the structure-function relationship by considering phylogenetic context The history of the CATH structural classification of protein domains Crystal structure of D-aminoacylase from Alcaligenes faecalis DA1. A novel subset of amidohydrolases and insights into the enzyme mechanism Crystal structure of yeast cytosine deaminase. Insights into enzyme mechanism and evolution The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation An IgG-like Domain in the Minor Pilin GBS52 of Streptococcus agalactiae Mediates Lung Epithelial Cell Adhesion The prokaryotic Cys2His2 zinc-finger adopts a novel fold as revealed by the NMR structure of Agrobacterium tumefaciens Ros DNA-binding domain Identification and Structural Characterization of a CBP/p300-Binding Domain from the ETS Family Transcription Factor GABPα TM0486 from the Hyperthermophilic Anaerobe Thermotoga maritima is a Thiamin-binding Protein Involved in Response of the Cell to Oxidative Conditions The substrate/product-binding modes of a novel GH120 β-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485 The Crystal Structure of Arabidopsis VSP1 Reveals the Plant Class C-Like Phosphatase Structure of the DDDD Superfamily of Phosphohydrolases Crystal structure of the predicted phospholipase LYPLAL1 reveals unexpected functional plasticity despite close relationship to acyl protein thioesterases Structural study of TTR-52 reveals the mechanism by which a bridging molecule mediates apoptotic cell engulfment Structure and catalytic mechanism of the evolutionarily unique bacterial chalcone isomerase Structural and functional similarity between the bacterial type III secretion system needle protein PrgI and the eukaryotic apoptosis Bcl-2 proteins Siroheme- and [Fe4-S4]-dependent NirA from Mycobacterium tuberculosis is a sulfite reductase with a covalent Cys-Tyr bond in the active site Crystal Structure of Chitinase ChiW from Paenibacillus sp. str. FPU-7 Reveals a Novel Type of Bacterial Cell-Surface-Expressed Multi-Modular Enzyme Machinery An Algebro-topological description of protein domain structure Comparative protein structure modeling using Modeller Solution structure of a soluble fragment derived from a membrane protein by shotgun proteolysis.A catalytic mechanism revealed by the crystal structures of the imidazolonepropionase from Bacillus subtilis.Divergent evolution within protein superfolds inferred from profile-based phylogenetics Automated assignment of SCOP and CATH protein structure classifications from FSSP scores.Protein structure and evolutionary history determine sequence space topology Crystal structure of glucooligosaccharide oxidase from Acremonium strictum: a novel flavinylation of 6-S-cysteinyl, 8alpha-N1-histidyl FAD.FAST-NMR: functional annotation screening technology using NMR spectroscopy Comparative Protein Structure Modeling Using MODELLER The application of FAST-NMR for the identification of novel drug discovery targets Alignment-free local structural search by writhe decomposition Generation of a consensus protein domain dictionary.Protein structure prediction using a docking-based hierarchical folding scheme.Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach

P2860

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P2860

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

http://www.wikidata.org/entity/Q24605760

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2001 nî lūn-bûn

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2001年の論文

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2001年論文

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2001年論文

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2001年論文

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2001年論文

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Nucleic Acids Research

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P2860

Crystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily

Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors

T-Coffee: A novel method for fast and accurate multiple sequence alignment

Mapping the protein universe

Evolution of protein sequences and structures.

Protein structure comparison using the markov transition model of evolution.

Dictionary of recurrent domains in protein structures.

The CATH Database provides insights into protein structure/function relationships.

MMDB: Entrez's 3D structure database.

SCOP: a Structural Classification of Proteins database.

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10.1093/NAR/29.1.55

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protein folding

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