Bayesian coestimation of phylogeny and sequence alignment - Test2 - elhamkhani - TriplyDB

Bayesian coestimation of phylogeny and sequence alignment

Bayesian coestimation of phylogeny and sequence alignment

http://www.wikidata.org/entity/Q24794248

about

The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data Resolving difficult phylogenetic questions: why more sequences are not enough Functional classification using phylogenomic inference SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework Multiple sequence alignment accuracy and evolutionary distance estimation General continuous-time Markov model of sequence evolution via insertions/deletions: local alignment probability computation.General continuous-time Markov model of sequence evolution via insertions/deletions: are alignment probabilities factorable?Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map BEAST: Bayesian evolutionary analysis by sampling trees.BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC The nature of protein domain evolution: shaping the interaction network Phylogenetic analyses: A toolbox expanding towards Bayesian methods Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution Divergent evolution within protein superfolds inferred from profile-based phylogenetics How reliably can we predict the reliability of protein structure predictions?A stochastic evolutionary model for protein structure alignment and phylogeny.Probabilistic phylogenetic inference with insertions and deletions Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.The construction and use of log-odds substitution scores for multiple sequence alignment.Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganisms [corrected].PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination.An alignment confidence score capturing robustness to guide tree uncertainty Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure.Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistent.Evolutionary inference via the Poisson Indel Process.Quantifying variances in comparative RNA secondary structure prediction A note on probabilistic models over strings: the linear algebra approach.Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.Statistics and truth in phylogenomics.GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters Treelength optimization for phylogeny estimation A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.Scaling statistical multiple sequence alignment to large datasets.New methods for inferring population dynamics from microbial sequences.Large-scale multiple sequence alignment and tree estimation using SATé.Choosing and using introns in molecular phylogenetics.

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Bayesian coestimation of phylogeny and sequence alignment

http://www.wikidata.org/entity/Q24794248

description

2005 nî lūn-bûn

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2005 թվականին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年論文

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2005年论文

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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type

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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Bayesian coestimation of phylogeny and sequence alignment

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BMC Bioinformatics

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Bayesian coestimation of phylogeny and sequence alignment

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P2093

István Miklós

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Jens Ledet Jensen

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Jotun Hein

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P2860

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

A probabilistic model for the evolution of RNA structure

MRBAYES: Bayesian inference of phylogenetic trees

Evolutionary trees from DNA sequences: a maximum likelihood approach

T-Coffee: A novel method for fast and accurate multiple sequence alignment

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

Molecular phylogenetics: state-of-the-art methods for looking into the past.

Genealogical inference from microsatellite data

Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.

Maximum likelihood alignment of DNA sequences.

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83

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scholarly article

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205361

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10.1186/1471-2105-6-83

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1

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6

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Alexei J. Drummond

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2005-01-01T00:00:00Z

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7932456

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1033131334

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15804354

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1087833

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