A new generation of JASPAR, the open-access repository for transcription factor binding site profiles - Test2 - elhamkhani - TriplyDB

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

http://www.wikidata.org/entity/Q25255984

about

Serum response factor binding sites differ in three human cell types A small-cell lung cancer genome with complex signatures of tobacco exposure ORegAnno: an open-access community-driven resource for regulatory annotation An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)A web server for transcription factor binding site prediction Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs Origin of primate orphan genes: a comparative genomics approach The CRTC1-SIK1 pathway regulates entrainment of the circadian clock Identification and analysis of a conserved Tcfap2a intronic enhancer element required for expression in facial and limb bud mesenchyme Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles Common functional genetic variants in catecholamine storage vesicle protein promoter motifs interact to trigger systemic hypertension.MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities.Practical strategies for discovering regulatory DNA sequence motifs.Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.Developments in CORG: a gene-centric comparative genomics resource EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function.Multiple non-collinear TF-map alignments of promoter regions.Construction of a genome-scale structural map at single-nucleotide resolution.In vivo validation of a computationally predicted conserved Ath5 target gene set Mammalian microRNA prediction through a support vector machine model of sequence and structure.Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters.An evolutionarily conserved sexual signature in the primate brain Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy.Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae Gene set-based module discovery in the breast cancer transcriptome.Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs Effect of hydroxyurea on the promoter occupancy profiles of tumor suppressor p53 and p73.Modeling the quantitative specificity of DNA-binding proteins from example binding sites.BayesPeak: Bayesian analysis of ChIP-seq data.Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances.A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.

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A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

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description

2006 nî lūn-bûn

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2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2006 թվականի հունվարին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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Nucleic Acids Research

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A new generation of JASPAR, th ...... n factor binding site profiles

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Dominique Vlieghe

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Frans van Roy

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Kris Vleminckx

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Pieter J De Bleser

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MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

CONREAL web server: identification and visualization of conserved transcription factor binding sites.

T-Reg Comparator: an analysis tool for the comparison of position weight matrices

DNA binding sites: representation and discovery

The ENCODE (ENCyclopedia Of DNA Elements) Project

TRANSFAC: transcriptional regulation, from patterns to profiles

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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D95-7

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scholarly article

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4256452

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10.1093/NAR/GKJ115

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Database issue

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34

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Wyeth Wasserman

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2006-01-01T00:00:00Z

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7389413

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16381983

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1347477

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