JASPAR: an open-access database for eukaryotic transcription factor binding profiles - Test2 - elhamkhani - TriplyDB

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

http://www.wikidata.org/entity/Q29614419

about

Asap: a framework for over-representation statistics for transcription factor binding sites Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains MicroRNA-145 targets YES and STAT1 in colon cancer cells Complex Loci in human and mouse genomes De novo genesis of enhancers in vertebrates A large fraction of extragenic RNA pol II transcription sites overlap enhancers MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets Sequence changes in predicted promoter elements of STK11/LKB1 are unlikely to contribute to Peutz-Jeghers syndrome MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer DBD: a transcription factor prediction database.EXTREME: an online EM algorithm for motif discovery Identification of transcriptional regulators in the mouse immune system An epigenetic blockade of cognitive functions in the neurodegenerating brain Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals Interferon-gamma is a critical modulator of CB(2) cannabinoid receptor signaling during neuropathic pain JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Fast index based algorithms and software for matching position specific scoring matrices MEME: discovering and analyzing DNA and protein sequence motifs JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies Inferring combinatorial regulation of transcription in silico Identification of functional SNPs in the 5-prime flanking sequences of human genes The MAPPER database: a multi-genome catalog of putative transcription factor binding sites NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals.Lower rate of genomic variation identified in the trans-membrane domain of monoamine sub-class of Human G-Protein Coupled Receptors: the Human GPCR-DB Database oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.Dcode.org anthology of comparative genomic tools CONREAL web server: identification and visualization of conserved transcription factor binding sites.FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting.Glucocorticoid receptor-dependent gene regulatory networks.T-Reg Comparator: an analysis tool for the comparison of position weight matrices Measuring similarities between transcription factor binding sites Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions.A new generation of JASPAR, the open-access repository for transcription factor binding site profiles ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

http://www.wikidata.org/entity/Q29614419

description

2004 nî lūn-bûn

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2004 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2004 թվականի հունվարին հրատարակված գիտական հոդված

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2004年の論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年論文

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2004年论文

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name

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

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Nucleic Acids Research

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JASPAR: an open-access database for eukaryotic transcription factor binding profiles

@en

P2093

Alkema W

http://www.w3.org/2001/XMLSchema#string

Engström P

http://www.w3.org/2001/XMLSchema#string

Sandelin A

http://www.w3.org/2001/XMLSchema#string

Wasserman WW

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P2860

Sequence logos: a new way to display consensus sequences

Understanding the language of gene regulation

Identification of conserved regulatory elements by comparative genome analysis

A general method applicable to the search for similarities in the amino acid sequence of two proteins

DNA binding sites: representation and discovery

TRANSFAC: transcriptional regulation, from patterns to profiles

TFBS: Computational framework for transcription factor binding site analysis.

Phylogenetic shadowing of primate sequences to find functional regions of the human genome.

Computational prediction of eukaryotic protein-coding genes.

A predictive model for regulatory sequences directing liver-specific transcription.

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D91-4

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scholarly article

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181059

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10.1093/NAR/GKH012

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Database issue

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P478

32

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Pär G Engström

Wyeth Wasserman

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2004-01-01T00:00:00Z

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8954952

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14681366

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P932

308747

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