MaGe: a microbial genome annotation system supported by synteny results - Test2 - elhamkhani - TriplyDB

MaGe: a microbial genome annotation system supported by synteny results

MaGe: a microbial genome annotation system supported by synteny results

http://www.wikidata.org/entity/Q25257010

about

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes A tale of two oxidation states: bacterial colonization of arsenic-rich environments The RAST Server: rapid annotations using subsystems technology Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions Complex archaea that bridge the gap between prokaryotes and eukaryotes Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia Comparative and functional genomic analyses of iron transport and regulation in Leptospira spp Adhesion, Biofilm Formation, and Genomic Features of Campylobacter jejuni Bf, an Atypical Strain Able to Grow under Aerobic Conditions.Parallel evolution of a type IV secretion system in radiating lineages of the host-restricted bacterial pathogen Bartonella Function and X-Ray crystal structure of Escherichia coli YfdE The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes Genome analysis of Bacillus amyloliquefaciens Subsp. plantarum UCMB5113: a rhizobacterium that improves plant growth and stress management Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii Bioinformatics of prokaryotic RNAs Selection-driven extinction dynamics for group II introns in Enterobacteriales NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography Evidence for a LOS and a capsular polysaccharide in Capnocytophaga canimorsus IMG ER: a system for microbial genome annotation expert review and curation High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment.Discovery and characterization of a new bacterial candidate division by an anaerobic sludge digester metagenomic approach.A new family of secreted toxins in pathogenic Neisseria species.JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.Genepi: a blackboard framework for genome annotation.The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.Genome-wide transposon mutagenesis in pathogenic Leptospira species.Deciphering the connectivity structure of biological networks using MixNet A subset of the diverse COG0523 family of putative metal chaperones is linked to zinc homeostasis in all kingdoms of life.

P2860

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P2860

MaGe: a microbial genome annotation system supported by synteny results

http://www.wikidata.org/entity/Q25257010

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MaGe: a microbial genome annotation system supported by synteny results

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MaGe: a microbial genome annotation system supported by synteny results

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MaGe: a microbial genome annotation system supported by synteny results

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MaGe: a microbial genome annotation system supported by synteny results

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MaGe: a microbial genome annotation system supported by synteny results

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MaGe: a microbial genome annotation system supported by synteny results

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Nucleic Acids Research

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MaGe: a microbial genome annotation system supported by synteny results

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Aurélie Lajus

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David Vallenet

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Géraldine Pascal

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Laurent Labarre

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Stéphane Cruveiller

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Stéphanie Bocs

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P2860

Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125

Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium

EcoGene: a genome sequence database for Escherichia coli K-12.

BASys: a web server for automated bacterial genome annotation

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Rfam: annotating non-coding RNAs in complete genomes

The Universal Protein Resource (UniProt)

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

STRING: known and predicted protein-protein associations, integrated and transferred across organisms

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10.1093/NAR/GKJ406

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1

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34

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Claude Scarpelli

Claudine Médigue

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2006-01-01T00:00:00Z

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7365371

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16407324

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1326237

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