CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. - Test2 - elhamkhani - TriplyDB

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

http://www.wikidata.org/entity/Q25257773

about

Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing Identifying and characterizing a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts High-resolution mapping and characterization of open chromatin across the genome FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki Gateways to the FANTOM5 promoter level mammalian expression atlas Genome Network and FANTOM3: assessing the complexity of the transcriptome Conserved alternative and antisense transcripts at the programmed cell death 2 locus.PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs Evolutionary turnover of mammalian transcription start sites.Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.Prediction-based approaches to characterize bidirectional promoters in the mammalian genome Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array.Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts.The proximal first exon architecture of the murine ghrelin gene is highly similar to its human orthologue.Intergenic, gene terminal, and intragenic CpG islands in the human genome.Expression of distinct RNAs from 3' untranslated regions.Phenotypic annotation of the mouse X chromosome Integrative epigenomic and genomic analysis of malignant pheochromocytoma.Transcriptional regulation of the Alström syndrome gene ALMS1 by members of the RFX family and Sp1 Mir193b-365 is essential for brown fat differentiation.Hidden treasures in unspliced EST data.Transcriptional and epigenetic regulation of KIAA1199 gene expression in human breast cancer Orthology-driven mapping of bidirectional promoters in human and mouse genomes.Validation of skeletal muscle cis-regulatory module predictions reveals nucleotide composition bias in functional enhancers.PPARγ and NF-κB regulate the gene promoter activity of their shared repressor, TNIP1 Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.Basal core promoters control the equilibrium between negative cofactor 2 and preinitiation complexes in human cells Design of Knowledge Bases for Plant Gene Regulatory Networks.The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation.Developmental Control of NRAMP1 (SLC11A1) Expression in Professional Phagocytes TPC1 has two variant isoforms, and their removal has different effects on endo-lysosomal functions compared to loss of TPC2.Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity.

P2860

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P2860

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

http://www.wikidata.org/entity/Q25257773

description

2006 nî lūn-bûn

@nan

2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի հունվարին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

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CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

@ast

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

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type

label

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

@nl

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

@ast

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

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prefLabel

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

@nl

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

@ast

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

@en

P1433

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P356

P1433

Nucleic Acids Research

P1476

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.

@en

P2093

Chikatoshi Kai

http://www.w3.org/2001/XMLSchema#string

Jun Kawai

http://www.w3.org/2001/XMLSchema#string

Shiro Fukuda

http://www.w3.org/2001/XMLSchema#string

P2860

Gene ontology: tool for the unification of biology

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

The generic genome browser: a building block for a model organism system database

Entrez Gene: gene-centered information at NCBI

Serial analysis of gene expression

CpG islands in vertebrate genomes

The transcriptional landscape of the mammalian genome

The UCSC Genome Browser Database

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

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D632-6

http://www.w3.org/2001/XMLSchema#string

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scholarly article

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154732

http://www.w3.org/2001/XMLSchema#string

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10.1093/NAR/GKJ034

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P407

P433

Database issue

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P478

34

http://www.w3.org/2001/XMLSchema#string

P50

Yoshihide Hayashizaki

Shintaro Katayama

Takeya Kasukawa

P577

2006-01-01T00:00:00Z

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P5875

7389378

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16381948

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1347397

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