Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines - Test2 - elhamkhani - TriplyDB

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines

Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines

http://www.wikidata.org/entity/Q27644750

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Isostericity and tautomerism of base pairs in nucleic acids The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates Structural aspects of messenger RNA reading frame maintenance by the ribosome Conformation Effects of Base Modification on the Anticodon Stem–Loop of Bacillus subtilis tRNATyr Human tRNALys3UUU Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto–Enol Tautomerism Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position Expanded use of sense codons is regulated by modified cytidines in tRNA The complete chloroplast genome sequence of Podocarpus lambertii: genome structure, evolutionary aspects, gene content and SSR detection Evidence from glycine transfer RNA of a frozen accident at the dawn of the genetic code.Structural insights into the translational infidelity mechanism.The cost of wobble translation in fungal mitochondrial genomes: integration of two traditional hypotheses.Chemical synthesis of the 5-taurinomethyl(-2-thio)uridine modified anticodon arm of the human mitochondrial tRNA(Leu(UUR)) and tRNA(Lys)C5-substituents of uridines and 2-thiouridines present at the wobble position of tRNA determine the formation of their keto-enol or zwitterionic forms - a factor important for accuracy of reading of guanosine at the 3΄-end of the mRNA codons.Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids Hierarchy of RNA functional dynamics.Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.In vivo identification of essential nucleotides in tRNALeu to its functions by using a constructed yeast tRNALeu knockout strain.The contributions of wobbling and superwobbling to the reading of the genetic code.Why base tautomerization does not cause errors in mRNA decoding on the ribosome Tissue taurine depletion alters metabolic response to exercise and reduces running capacity in mice.The yfiC gene of E. coli encodes an adenine-N6 methyltransferase that specifically modifies A37 of tRNA1Val(cmo5UAC)Functional importance of Ψ38 and Ψ39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast Nucleotide modifications and tRNA anticodon-mRNA codon interactions on the ribosome Dynamics of Recognition between tRNA and elongation factor Tu Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification C to U editing at position 32 of the anticodon loop precedes tRNA 5' leader removal in trypanosomatids.Watson-Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation.Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons.Effects of tRNA modification on translational accuracy depend on intrinsic codon-anticodon strength tRNA's modifications bring order to gene expression Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications.The human mitochondrial tRNAMet: structure/function relationship of a unique modification in the decoding of unconventional codons.DETECTING CONFORMATIONAL DIFFERENCES BETWEEN RNA 3D STRUCTURES.Unconventional decoding of the AUA codon as methionine by mitochondrial tRNAMet with the anticodon f5CAU as revealed with a mitochondrial in vitro translation system.An integrated, structure- and energy-based view of the genetic code.Studies of translational misreading in vivo show that the ribosome very efficiently discriminates against most potential errors.tRNA-mediated codon-biased translation in mycobacterial hypoxic persistence.Free energy calculation of modified base-pair formation in explicit solvent: A predictive model.

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Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines

http://www.wikidata.org/entity/Q27644750

description

2007 nî lūn-bûn

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2007 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2007年の論文

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2007年論文

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2007年論文

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2007年论文

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Nature Structural & Molecular Biology

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Mechanism for expanding the de ...... As by modification of uridines

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Andrzej Malkiewicz

http://www.w3.org/2001/XMLSchema#string

Franck A P Vendeix

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Frank V Murphy

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Paul F Agris

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

Recognition of cognate transfer RNA by the 30S ribosomal subunit

Selection of tRNA by the ribosome requires a transition from an open to a closed form

Structure of a mispaired RNA double helix at 1.6-A resolution and implications for the prediction of RNA secondary structure

Coot: model-building tools for molecular graphics

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

Structure of the 70S ribosome complexed with mRNA and tRNA

The CCP4 suite: programs for protein crystallography

The origin of the genetic code

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498-502

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scholarly article

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4441301

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10.1038/NSMB1242

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6

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14

http://www.w3.org/2001/XMLSchema#string

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Albert Weixlbaumer

Agnieszka Dziergowska

Venkatraman Ramakrishnan

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2007-06-01T00:00:00Z

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6334918

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1010194852

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17496902

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structural biology

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2816034

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