3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures - Test2 - elhamkhani - TriplyDB

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

http://www.wikidata.org/entity/Q27860547

about

Role of histone tails in structural stability of the nucleosome The mitochondrial transcription and packaging factor Tfam imposes a U-turn on mitochondrial DNA Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex Crystal structure of a junction between two Z-DNA helices NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans A left-handed RNA double helix bound by the Z alpha domain of the RNA-editing enzyme ADAR1 Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase New insights into DNA triplexes: residual twist and radial difference as measures of base triplet non-isomorphism and their implication to sequence-dependent non-uniform DNA triplex Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d The contribution of phosphate-phosphate repulsions to the free energy of DNA bending.Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit.Protein-DNA binding specificity predictions with structural models A host-guest approach for determining drug-DNA interactions: an example using netropsin A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution.Structural and dynamic basis of a supercoiling-responsive DNA element Nucleic acid visualization with UCSF Chimera Assessing the Current State of Amber Force Field Modifications for DNA Crystal structure of a complex of DNA with one AT-hook of HMGA1 Electronic detection of dsDNA transition from helical to zipper conformation using graphene nanopores.Two arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome core Distinct Roles of Histone H3 and H2A Tails in Nucleosome Stability.Twisting right to left: A…A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation Structural basis of gate-DNA breakage and resealing by type II topoisomerases Free energy landscape and transition pathways from Watson-Crick to Hoogsteen base pairing in free duplex DNA Crystal structure of group II intron domain 1 reveals a template for RNA assembly Insights into finding a mismatch through the structure of a mispaired DNA bound by a rhodium intercalator Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA NMR Structures of (rGC U GA G GCU) 2 and (rGC G GA U GCU) 2 : Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs † , ‡Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R - and S -α-CH 3 -γ-OH-1, N 2 -Propano-2‘-deoxyguanosine in the 5‘-CpG-3‘ DNA Sequence †Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs †Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain Breaking pseudo-twofold symmetry in the poliovirus 3'-UTR Y-stem by restoring Watson-Crick base pairs Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines Packing features of the all-AT oligonucleotide d(AAATTT)An Atomic Model of the Interferon-β Enhanceosome

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

http://www.wikidata.org/entity/Q27860547

description

2003 nî lūn-bûn

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2003 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2003 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2003年の論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年论文

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Nucleic Acids Research

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3DNA: a software package for t ...... sional nucleic acid structures

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Wilma K Olson

http://www.w3.org/2001/XMLSchema#string

Xiang-Jun Lu

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P2860

Crystal structure of the nucleosome core particle at 2.8 A resolution

Molecular Configuration in Sodium Thymonucleate

The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems

Geometric nomenclature and classification of RNA base pairs

Anisotropic flexibility of DNA and the nucleosomal structure

Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs

The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA

A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

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5108-21

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scholarly article

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206108

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10.1093/NAR/GKG680

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17

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31

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2003-09-01T00:00:00Z

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237293672

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12930962

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212791

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