Folding funnels and frustration in off-lattice minimalist protein landscapes. - Test2 - elhamkhani - TriplyDB

Folding funnels and frustration in off-lattice minimalist protein landscapes.

Folding funnels and frustration in off-lattice minimalist protein landscapes.

http://www.wikidata.org/entity/Q30176183

about

Conformational transitions of adenylate kinase: switching by cracking Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways Periodic forces trigger knot untying during translocation of knotted proteins.Single Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data Prion protein: evolution caught en route Energy landscape and global optimization for a frustrated model protein.An off-lattice frustrated model protein with a six-stranded β-barrel structure.An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.Statistical temperature molecular dynamics: application to coarse-grained beta-barrel-forming protein models.Effects of surface tethering on protein folding mechanisms.Local-structural diversity and protein folding: application to all-beta off-lattice protein models.Effects of frustration, confinement, and surface interactions on the dimerization of an off-lattice beta-barrel protein.Self-assembly of peptides into a beta-barrel motif.Folding of a highly conserved diverging turn motif from the SH3 domain.Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse Learning To Fold Proteins Using Energy Landscape Theory.Symmetry-restrained molecular dynamics simulations improve homology models of potassium channels Sequence periodicity and secondary structure propensity in model proteins.Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation.Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase.How well does a funneled energy landscape capture the folding mechanism of spectrin domains?Energy landscape distortions and the mechanical unfolding of proteins Forced-unfolding and force-quench refolding of RNA hairpins.Evidence of discrete substates and unfolding pathways in green fluorescent protein.Src kinase conformational activation: thermodynamics, pathways, and mechanisms.Folding of a pressure-denatured model protein Dependence of protein folding stability and dynamics on the density and composition of macromolecular crowders.Coordinate-dependent diffusion in protein folding.Reaction coordinates and rates from transition paths.Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein.Alpha-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy.The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding Quantifying the Sources of Kinetic Frustration in Folding Simulations of Small Proteins.Thermodynamics and kinetics of a folded-folded' transition at valine-9 of a GCN4-like leucine zipper.Folding thermodynamics of model four-strand antiparallel beta-sheet proteins.Protein folding pathways and kinetics: molecular dynamics simulations of beta-strand motifs.Assembly and kinetic folding pathways of a tetrameric beta-sheet complex: molecular dynamics simulations on simplified off-lattice protein models Folding Trp-cage to NMR resolution native structure using a coarse-grained protein model Folding of the protein domain hbSBD Structural transitions of confined model proteins: molecular dynamics simulation and experimental validation

P2860

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P2860

Folding funnels and frustration in off-lattice minimalist protein landscapes.

http://www.wikidata.org/entity/Q30176183

description

1998 nî lūn-bûn

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1998 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

1998 թվականի մայիսին հրատարակված գիտական հոդված

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1998年の論文

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1998年論文

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1998年論文

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1998年論文

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1998年論文

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1998年論文

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1998年论文

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name

Folding funnels and frustration in off-lattice minimalist protein landscapes.

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Folding funnels and frustration in off-lattice minimalist protein landscapes.

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type

label

Folding funnels and frustration in off-lattice minimalist protein landscapes.

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Folding funnels and frustration in off-lattice minimalist protein landscapes.

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prefLabel

Folding funnels and frustration in off-lattice minimalist protein landscapes.

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Folding funnels and frustration in off-lattice minimalist protein landscapes.

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PNAS.95.11.5921

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Proceedings of the National Academy of Sciences of the United States of America

P1476

Folding funnels and frustration in off-lattice minimalist protein landscapes.

@en

P2093

A E García

http://www.w3.org/2001/XMLSchema#string

H Nymeyer

http://www.w3.org/2001/XMLSchema#string

J N Onuchic

http://www.w3.org/2001/XMLSchema#string

P2860

Protein folding funnels: a kinetic approach to the sequence-structure relationship

Toward an outline of the topography of a realistic protein-folding funnel

Contribution of physical chemistry to an understanding of protein structure and function

Intermediates in the folding reactions of small proteins

Sequence space, folding and protein design

Protein unfolding pathways explored through molecular dynamics simulations

From Levinthal to pathways to funnels

Nucleation mechanisms in protein folding

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

Funnels, pathways, and the energy landscape of protein folding: a synthesis

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5921-5928

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scholarly article

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10.1073/PNAS.95.11.5921

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11

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13683085

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9600893

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protein folding

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34496

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