Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data
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Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcriptsGenomic-Wide Analysis with Microarrays in Human OncologymRNA profiling reveals determinants of trastuzumab efficiency in HER2-positive breast cancerVariation in promiscuity and sexual selection drives avian rate of Faster-Z evolutionOpen pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell linesInformatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.Transforming RNA-Seq data to improve the performance of prognostic gene signatures.Practicability of detecting somatic point mutation from RNA high throughput sequencing dataRNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data MiningA novel RNA sequencing data analysis method for cell line authentication.Probing functional polymorphisms in the dengue vector, Aedes aegypti.Large-scale SNP screenings identify markers linked with GCRV resistant traits through transcriptomes of individuals and cell lines in Ctenopharyngodon idella.Population genomics reveals a candidate gene involved in bumble bee pigmentation.Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)Differential and limited expression of mutant alleles in multiple myeloma.Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeastWestern white pine SNP discovery and high-throughput genotyping for breeding and conservation applicationsComprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemiaBioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis.Alternative applications for distinct RNA sequencing strategies.Molecular tools and bumble bees: revealing hidden details of ecology and evolution in a model system.Combination of RNAseq and SNP nanofluidic array reveals the center of genetic diversity of cacao pathogen Moniliophthora roreri in the upper Magdalena Valley of Colombia and its clonality.Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing.The developmental transcriptome landscape of bovine skeletal muscle defined by Ribo-Zero ribonucleic acid sequencing.Targeted RNA Sequencing Assay to Characterize Gene Expression and Genomic Alterations.Improved annotation with de novo transcriptome assembly in four social amoeba species.Discovering All Transcriptome Single-Nucleotide Polymorphisms and Scanning for Selection Signatures in Ducks (Anas platyrhynchos).Population genomics of divergence among extreme and intermediate color forms in a polymorphic insectIntroduction to RNA-Seq and its applications to drug discovery and development.Genome-wide, integrative analysis implicates microRNA dysregulation in autism spectrum disorder.Transcriptomic investigation of meat tenderness in two Italian cattle breeds.Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals.Transcriptome analysis of the pectoral muscles of local chickens and commercial broilers using Ribo-Zero ribonucleic acid sequencing.SNP discovery in the transcriptome of white Pacific shrimp Litopenaeus vannamei by next generation sequencing.SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelinesThe discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data.Technological Developments in lncRNA Biology.
P2860
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P2860
Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data
description
2013 nî lūn-bûn
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2013 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի մարտին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
Development of strategies for ...... uation using 1000 Genomes data
@ast
Development of strategies for ...... uation using 1000 Genomes data
@en
type
label
Development of strategies for ...... uation using 1000 Genomes data
@ast
Development of strategies for ...... uation using 1000 Genomes data
@en
prefLabel
Development of strategies for ...... uation using 1000 Genomes data
@ast
Development of strategies for ...... uation using 1000 Genomes data
@en
P2093
P2860
P50
P1433
P1476
Development of strategies for ...... uation using 1000 Genomes data
@en
P2093
Emma M Quinn
Matthew Hill
Paul Cormican
P2860
P304
P356
10.1371/JOURNAL.PONE.0058815
P407
P577
2013-03-26T00:00:00Z