A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
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Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in RA practical guide to single-cell RNA-sequencing for biomedical research and clinical applications.Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression.SCENIC: single-cell regulatory network inference and clustering.Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq.Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data.Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing.Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders.Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells.Parallel derivation of isogenic human primed and naive induced pluripotent stem cells.Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues.SCANPY: large-scale single-cell gene expression data analysis.Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation.scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons.Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation.An interpretable framework for clustering single-cell RNA-Seq datasets.Beyond Enumeration: Functional and Computational Analysis of Circulating Tumor Cells to Investigate Cancer Metastasis.beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.Transcriptomic analysis of the harvested endothelial cells in a swine model of mechanical thrombectomy.zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.Cancer Diagnosis Using a Liquid Biopsy: Challenges and Expectations.Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional declineDetection and removal of barcode swapping in single-cell RNA-seq dataSingle cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populationsDisease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vesselsSingle-cell transcriptomics reveal that PD-1 mediates immune tolerance by regulating proliferation of regulatory T cellsThe Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of MacrophagesUnravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seqscPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing dataDefining Lineage Potential and Fate Behavior of Precursors during Pancreas DevelopmentAn Introduction to the Analysis of Single-Cell RNA-Sequencing DataInvasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsetsSingle-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice
P2860
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P2860
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
description
2016 nî lūn-bûn
@nan
2016 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2016 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2016年の論文
@ja
2016年論文
@yue
2016年論文
@zh-hant
2016年論文
@zh-hk
2016年論文
@zh-mo
2016年論文
@zh-tw
2016年论文
@wuu
name
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@ast
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@en
type
label
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@ast
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@en
prefLabel
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@ast
A step-by-step workflow for lo ...... NA-seq data with Bioconductor.
@en
P2860
P50
P921
P1433
P1476
A step-by-step workflow for lo ...... RNA-seq data with Bioconductor
@en
P2093
Aaron T L Lun
P2860
P356
10.12688/F1000RESEARCH.9501.2
P577
2016-08-31T00:00:00Z