Towards the identification of essential genes using targeted genome sequencing and comparative analysis. - Test2 - elhamkhani - TriplyDB

Towards the identification of essential genes using targeted genome sequencing and comparative analysis.

Towards the identification of essential genes using targeted genome sequencing and comparative analysis.

http://www.wikidata.org/entity/Q33260930

about

A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi Predicting Essential Genes and Proteins Based on Machine Learning and Network Topological Features: A Comprehensive Review Enzymes are enriched in bacterial essential genes Comparative genomics analysis of Mycobacterium ulcerans for the identification of putative essential genes and therapeutic candidates Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi The constancy of gene conservation across divergent bacterial orders.Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information.Relationship between operon preference and functional properties of persistent genes in bacterial genomes Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa.Identifying essential genes in bacterial metabolic networks with machine learning methods A statistical framework for improving genomic annotations of prokaryotic essential genes.Training set selection for the prediction of essential genes An Approach for Predicting Essential Genes Using Multiple Homology Mapping and Machine Learning Algorithms.Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks Predicting essential genes in prokaryotic genomes using a linear method: ZUPLS.Investigating the predictability of essential genes across distantly related organisms using an integrative approach From hub proteins to hub modules: the relationship between essentiality and centrality in the yeast interactome at different scales of organization.Prediction of essential proteins based on gene expression programming A new computational strategy for predicting essential genes.Putative essential and core-essential genes in Mycoplasma genomes Do housekeeping genes exist?Selection of key sequence-based features for prediction of essential genes in 31 diverse bacterial species Properties of genes essential for mouse development.Towards a compendium of essential genes - From model organisms to synthetic lethality in cancer cells.Prediction of protein essentiality by the support vector machine with statistical tests.Identification of protein functions using a machine-learning approach based on sequence-derived properties.Computational approaches to predicting essential proteins: a survey.Using 'omic' technology to target Helicobacter pylori.Genome-wide characterization of the relationship between essential and TATA-containing genes.An integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features.Advances and perspectives in computational prediction of microbial gene essentiality.Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions.Partial AUC maximization for essential gene prediction using genetic algorithms Selection to minimise noise in living systems and its implications for the evolution of gene expression.Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks.Gene essentiality prediction based on fractal features and machine learning.Proteins with Highly Evolvable Domain Architectures Are Nonessential but Highly Retained.Emerging and evolving concepts in gene essentiality.

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Towards the identification of essential genes using targeted genome sequencing and comparative analysis.

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Charles DeLisi

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Evan S Snitkin

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Simon Kasif

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P2860

Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Sequencing and comparison of yeast species to identify genes and regulatory elements

The regulatory content of intergenic DNA shapes genome architecture

Variation in the strength of selected codon usage bias among bacteria

The relationship of protein conservation and sequence length

Global analysis of protein localization in budding yeast.

Functional profiling of the Saccharomyces cerevisiae genome

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

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