GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products. - Test2 - elhamkhani - TriplyDB

GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.

GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.

http://www.wikidata.org/entity/Q33285423

about

WGCNA: an R package for weighted correlation network analysis Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Identification of a core miRNA-pathway regulatory network in glioma by therapeutically targeting miR-181d, miR-21, miR-23b, β-Catenin, CBP, and STAT3 Gene characterization index: assessing the depth of gene annotation Analysis of kinase gene expression patterns across 5681 human tissue samples reveals functional genomic taxonomy of the kinome Searching for synergies: matrix algebraic approaches for efficient pair screening The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.A hierarchical semiparametric model for incorporating intergene information for analysis of genomic data.Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data.Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.ontologyX: a suite of R packages for working with ontological data Extending pathways based on gene lists using InterPro domain signatures.Prediction of evolutionarily conserved interologs in Mus musculus.An atlas of the speed of copy number changes in animal gene families and its implications.Bayesian statistical modelling of human protein interaction network incorporating protein disorder information.An additional k-means clustering step improves the biological features of WGCNA gene co-expression networks.Functional bias in molecular evolution rate of Arabidopsis thaliana FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases Genome-wide inference of regulatory networks in Streptomyces coelicolor.A statistical approach to finding overlooked genetic associations.Sorting out inherent features of head-to-head gene pairs by evolutionary conservation DomainRBF: a Bayesian regression approach to the prioritization of candidate domains for complex diseases.Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.DOSim: an R package for similarity between diseases based on Disease Ontology.Predicting gene ontology from a global meta-analysis of 1-color microarray experiments.Neighbor overlap is enriched in the yeast interaction network: analysis and implications.A genomic strategy for the functional validation of colorectal cancer genes identifies potential therapeutic targets.Inferring domain-domain interactions from protein-protein interactions in the complex network conformation.mirTarPri: improved prioritization of microRNA targets through incorporation of functional genomics data Boosting probabilistic graphical model inference by incorporating prior knowledge from multiple sources.Prioritizing disease candidate proteins in cardiomyopathy-specific protein-protein interaction networks based on "guilt by association" analysis.GRank: a middleware search engine for ranking genes by relevance to given genes.Postgwas: advanced GWAS interpretation in R.How microRNA and transcription factor co-regulatory networks affect osteosarcoma cell proliferation.The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies.HPOSim: an R package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology.Emergence of differentially regulated pathways associated with the development of regional specificity in chicken skin Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer.A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool.A novel method to quantify gene set functional association based on gene ontology.

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GOSim--an R-package for computation of information theoretic GO similarities between terms and gene products.

http://www.wikidata.org/entity/Q33285423

description

2007 nî lūn-bûn

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2007 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2007 թվականի մայիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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name

GOSim--an R-package for comput ...... tween terms and gene products.

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GOSim--an R-package for comput ...... tween terms and gene products.

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GOSim--an R-package for comput ...... tween terms and gene products.

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GOSim--an R-package for comput ...... tween terms and gene products.

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1471-2105-8-166

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BMC Bioinformatics

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GOSim--an R-package for comput ...... tween terms and gene products.

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Holger Fröhlich

http://www.w3.org/2001/XMLSchema#string

Nora Speer

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Tim Beissbarth

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P2860

Cluster analysis and display of genome-wide expression patterns

The Gene Ontology (GO) database and informatics resource

Semantic similarity measures as tools for exploring the gene ontology

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies.

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1471-2105-8-166

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166

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scholarly article

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10.1186/1471-2105-8-166

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8

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Holger Fröhlich

Annemarie Poustka

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2007-05-22T00:00:00Z

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6313729

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17519018

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1892785

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