Large-scale computation of elementary flux modes with bit pattern trees.
about
Macroscopic modeling of mammalian cell growth and metabolismExploiting stoichiometric redundancies for computational efficiency and network reductionDRUM: a new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgaesybil – Efficient constraint-based modelling in RIn Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell FactoriesOptFlux: an open-source software platform for in silico metabolic engineeringSystem-level insights into yeast metabolism by thermodynamic analysis of elementary flux modesStructural control of metabolic fluxEnumeration of smallest intervention strategies in genome-scale metabolic networksQuantification of Interactions between Dynamic Cellular Network Functionalities by Cascaded LayeringIdentifying target processes for microbial electrosynthesis by elementary mode analysisIdentification of metabolic engineering targets through analysis of optimal and sub-optimal routesProduction of para-aminobenzoic acid from different carbon-sources in engineered Saccharomyces cerevisiaeIntegration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli.Advances in network-based metabolic pathway analysis and gene expression data integration.A principal components method constrained by elementary flux modes: analysis of flux data sets.Genome-scale models of bacterial metabolism: reconstruction and applications.Computing paths and cycles in biological interaction graphs.Inferring branching pathways in genome-scale metabolic networksIn silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties.Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network designComplete enumeration of elementary flux modes through scalable demand-based subnetwork definition.A new computational method to split large biochemical networks into coherent subnets.Analysis of complex metabolic behavior through pathway decomposition.FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.Predicting the physiological role of circadian metabolic regulation in the green alga Chlamydomonas reinhardtii.Parallelization of Nullspace Algorithm for the computation of metabolic pathwaysGenome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1.Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organismsDesigning optimal cell factories: integer programming couples elementary mode analysis with regulationRandom sampling of elementary flux modes in large-scale metabolic networks.Probabilistic strain optimization under constraint uncertaintyBioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.Comparison and improvement of algorithms for computing minimal cut sets.Metabolic proximity in the order of colonization of a microbial community.Refining carbon flux paths using atomic trace data.Metabolic modelling in the development of cell factories by synthetic biology.A depth-first search algorithm to compute elementary flux modes by linear programming.Metabolomics integrated elementary flux mode analysis in large metabolic networks.
P2860
Q26801210-91CBF0EF-ED0E-4046-B547-84B66A94131AQ27025838-022C4A2A-7A4C-4B02-951C-58631A2B018CQ27315964-FA6DFDA0-364A-44F4-80FF-1DD325AD2C4AQ27499049-4B8EE17F-B406-403E-B4EB-0985A5F25A2DQ28083571-78ACC9A5-8D90-4DE6-ABEA-73833A07DB8AQ28280084-9EDB1521-537C-4A43-9EFF-5AD6EB959711Q28481411-21B99952-D631-4C2B-B077-0AAE440746B7Q28537786-54B3376E-4335-40DA-A6AF-7A1BE554F011Q28538235-74723702-8587-4520-9107-E1E91AA0A363Q28546898-5B069B41-0446-4511-9D16-F3A7FCA3F558Q28651299-1E92FA27-A8A4-4041-9FA3-F11700F58324Q28708812-AE46020F-B2E4-4113-B25C-E7C211CFF99EQ28833226-BEA8DFB0-D33F-4982-B12C-3DCA23FDE224Q30578962-C8142A0D-B9D0-4916-ADE2-6636E10AC410Q30777076-2BAF002D-B234-44D2-9EC8-69C53DC25F46Q31090599-DAB9B20B-0430-4572-BB98-600F83D7D471Q33391538-78DF6D01-83D5-474D-B38D-681583C9C463Q33467564-CE302580-5457-4449-8F14-D33450C094D1Q33513747-76E0DEAA-2A1C-4447-BF73-833020700B15Q33517877-8E5642E5-2FDD-4F7B-AC9B-9578113ABF3FQ33520826-E8E96EBB-CCDB-44DB-9BEB-CE06760E6A67Q33563265-1C14A42E-EF74-455A-8F61-39DC226DD3A6Q33641931-E0825562-15A9-4A00-B15C-650A1441A7FEQ33812153-5AC0DAA6-2EBA-44F6-983A-12739F92BBD1Q33922321-55516025-F1A4-4206-9151-F4F605D83A83Q33933759-77C06681-034F-4D10-A35B-4F7A2F13370AQ34009229-D04BCD8E-1F4C-4C1D-9C70-E64696EAB9A1Q34068514-F8A08C78-777A-4EA8-97BA-81F96F28ACB8Q34072286-E651471F-5BBF-4FB0-BF11-04D995A92A42Q34152075-E7E04BA9-A5B2-476D-97A3-3289DB427021Q34382066-E1D89A3D-7FE4-43A4-816F-74DB9F79AE68Q34409668-985EDCB6-6A37-48FA-998A-8774170CC2EEQ34645341-061BCE4A-738D-46C3-B957-9A5640C24A48Q34691984-279D6F58-D0A3-4C92-B040-809225365C93Q35031820-0EC9989E-17D5-4F13-82C0-29D2036401ADQ35035442-47846FAC-27F7-4DAC-A823-CB2BEED1F280Q35052294-94BCA4FE-3F58-4132-96D4-C97ED9A75999Q35136555-84889272-9E20-4C1B-B62C-A5BFF2A3C86DQ35215331-AD485A62-0EA2-4EC5-B303-81A9E04BBFDDQ35574156-4BB81305-042D-4D6E-98AA-560A4EB850BF
P2860
Large-scale computation of elementary flux modes with bit pattern trees.
description
2008 nî lūn-bûn
@nan
2008 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Large-scale computation of elementary flux modes with bit pattern trees.
@ast
Large-scale computation of elementary flux modes with bit pattern trees.
@en
type
label
Large-scale computation of elementary flux modes with bit pattern trees.
@ast
Large-scale computation of elementary flux modes with bit pattern trees.
@en
prefLabel
Large-scale computation of elementary flux modes with bit pattern trees.
@ast
Large-scale computation of elementary flux modes with bit pattern trees.
@en
P2860
P356
P1433
P1476
Large-scale computation of elementary flux modes with bit pattern trees.
@en
P2093
Jörg Stelling
Marco Terzer
P2860
P304
P356
10.1093/BIOINFORMATICS/BTN401
P407
P577
2008-08-01T00:00:00Z