Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. - Test2 - elhamkhani - TriplyDB

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.

http://www.wikidata.org/entity/Q33373518

about

Detectable clonal mosaicism and its relationship to aging and cancer Characterization of large structural genetic mosaicism in human autosome Intratumour diversity of chromosome copy numbers in neuroblastoma mediated by on-going chromosome loss from a polyploid state Sensitive and specific detection of mosaic chromosomal abnormalities using the Parent-of-Origin-based Detection (POD) method A systematic comparison of copy number alterations in four types of female cancer Rare Germline Copy Number Variations and Disease Susceptibility in Familial Melanoma Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population.The pitfalls of platform comparison: DNA copy number array technologies assessed.SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data.Data analysis issues for allele-specific expression using Illumina's GoldenGate assay MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data Endometriosis is associated with rare copy number variants.Clonal evolution through loss of chromosomes and subsequent polyploidization in chondrosarcoma.Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum).Batch effect correction for genome-wide methylation data with Illumina Infinium platform.Allele-specific disparity in breast cancer.Deletions of 16q in Wilms tumors localize to blastemal-anaplastic cells and are associated with reduced expression of the IRXB renal tubulogenesis gene cluster.Identity by descent mapping of founder mutations in cancer using high-resolution tumor SNP data.Genome-wide CNV analysis replicates the association between GSTM1 deletion and bladder cancer: a support for using continuous measurement from SNP-array data SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data.A mechanistic basis for amplification differences between samples and between genome regions Reliable single chip genotyping with semi-parametric log-concave mixtures.The impact of quantile and rank normalization procedures on the testing power of gene differential expression analysis Performance assessment of copy number microarray platforms using a spike-in experiment.Advantage of using allele-specific copy numbers when testing for association in regions with common copy number variants.Reproducibility and reliability of SNP analysis using human cellular DNA at or near nanogram levels GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays A MEMS-Based Approach to Single Nucleotide Polymorphism Genotyping Evaluation of bias-variance trade-off for commonly used post-summarizing normalization procedures in large-scale gene expression studies.Identification of allelic imbalance with a statistical model for subtle genomic mosaicism.Copy-neutral loss of heterozygosity and chromosome gains and losses are frequent in gastrointestinal stromal tumors.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer Loss of photoreceptorness and gain of genomic alterations in retinoblastoma reveal tumor progression.An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays.A Meta-Analysis of Retinoblastoma Copy Numbers Refines the List of Possible Driver Genes Involved in Tumor Progression.

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P2860

Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.

http://www.wikidata.org/entity/Q33373518

description

2008 nî lūn-bûn

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2008 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2008 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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BMC Bioinformatics

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Normalization of Illumina Infi ...... and allelic intensity ratios.

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David Lindgren

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Gunnar Juliusson

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Johan Staaf

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Richard Rosenquist

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P2860

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

A stepwise framework for the normalization of array CGH data.

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

Normalization of cDNA microarray data

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

Microarray data normalization and transformation

''R"--project for statistical computing

dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data.

Spatial normalization of array-CGH data.

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9

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Johan Vallon-Christersson

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23296386

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2572624

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