G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae - Test2 - elhamkhani - TriplyDB

G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae

G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae

http://www.wikidata.org/entity/Q33646754

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G-quadruplexes and helicases Pif1 family helicases suppress genome instability at G-quadruplex motifs.Genetic instability in budding and fission yeast-sources and mechanisms Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential Re-evaluation of G-quadruplex propensity with G4Hunter Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity RPA prevents G-rich structure formation at lagging-strand telomeres to allow maintenance of chromosome ends Mitochondrial DNA replication: a PrimPol perspective.QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs.Genome-wide high-resolution mapping of chromosome fragile sites in Saccharomyces cerevisiae.G Quadruplex in Plants: A Ubiquitous Regulatory Element and Its Biological Relevance.Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.Mycobacterium tuberculosis DinG is a structure-specific helicase that unwinds G4 DNA: implications for targeting G4 DNA as a novel therapeutic approach.G-quadruplex recognition activities of E. Coli MutS.DNA sequences proximal to human mitochondrial DNA deletion breakpoints prevalent in human disease form G-quadruplexes, a class of DNA structures inefficiently unwound by the mitochondrial replicative Twinkle helicase.Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation.The intrinsically disordered amino-terminal region of human RecQL4: multiple DNA-binding domains confer annealing, strand exchange and G4 DNA binding.High-resolution mapping of spontaneous mitotic recombination hotspots on the 1.1 Mb arm of yeast chromosome IV The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli The Pif1 family in prokaryotes: what are our helicases doing in your bacteria?A parallel quadruplex DNA is bound tightly but unfolded slowly by pif1 helicase.The essential Schizosaccharomyces pombe Pfh1 DNA helicase promotes fork movement past G-quadruplex motifs to prevent DNA damage Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence.Overcoming natural replication barriers: differential helicase requirements.G4-associated human diseases.Discovery of a Family of Genomic Sequences Which Interact Specifically with the c-MYC Promoter to Regulate c-MYC Expression.Recombination events among virulence genes in malaria parasites are associated with G-quadruplex-forming DNA motifs.Evidence for the kinetic partitioning of polymerase activity on G-quadruplex DNA.Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein Mechanism of the antiproliferative activity of some naphthalene diimide G-quadruplex ligands.G-quadruplexes as novel cis-elements controlling transcription during embryonic development DNA secondary structures: stability and function of G-quadruplex structures.Global analysis of genomic instability caused by DNA replication stress in Saccharomyces cerevisiae The yin and yang of repair mechanisms in DNA structure-induced genetic instability.Emerging trends in G-quadruplex biology--role in epigenetic and evolutionary events.To peep into Pif1 helicase: multifaceted all the way from genome stability to repair-associated DNA synthesis.Impact of alternative DNA structures on DNA damage, DNA repair, and genetic instability Human Rev1 polymerase disrupts G-quadruplex DNA.Altered biochemical specificity of G-quadruplexes with mutated tetrads.R-loops highlight the nucleus in ALS.

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P2860

G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae

http://www.wikidata.org/entity/Q33646754

description

2010 nî lūn-bûn

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2010 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հուլիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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PLOS Computational Biology

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John A Capra

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Mona Singh

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Virginia A Zakian

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P2860

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

Quadruplex DNA: sequence, topology and structure

Sequencing and comparison of yeast species to identify genes and regulatory elements

Highly prevalent putative quadruplex sequence motifs in human DNA

Prevalence of quadruplexes in the human genome.

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

Genetic and physical maps of Saccharomyces cerevisiae

The transcriptional landscape of the yeast genome defined by RNA sequencing

The human genome browser at UCSC

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