Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
about
Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samplesRemoving noise from pyrosequenced ampliconsComparison of metatranscriptomic samples based on k-tuple frequenciesGene prediction with Glimmer for metagenomic sequences augmented by classification and clusteringBest practices for evaluating single nucleotide variant calling methods for microbial genomicsSInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence dataChallenges of Identifying Clinically Actionable Genetic Variants for Precision MedicineShining a light on dark sequencing: characterising errors in Ion Torrent PGM data.ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod speciesBiogeography of heterotrophic flagellate populations indicates the presence of generalist and specialist taxa in the Arctic OceanPyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.Reconstruction of viral population structure from next-generation sequencing data using multicommodity flowsPyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.Simulating a population genomics data set using FlowSim.Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations.OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent dataFASTQSim: platform-independent data characterization and in silico read generation for NGS datasets.Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data.A comparison of tools for the simulation of genomic next-generation sequencing data.PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a 'provisional-reference genome'.Systematic exploration of error sources in pyrosequencing flowgram data.FAAST: Flow-space Assisted Alignment Search Tool.RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA.Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding.Inferring viral quasispecies spectra from 454 pyrosequencing reads.An efficient simulator of 454 data using configurable statistical modelsGene fragmentation in bacterial draft genomes: extent, consequences and mitigationA cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.GemSIM: general, error-model based simulator of next-generation sequencing data.Grinder: a versatile amplicon and shotgun sequence simulatorART: a next-generation sequencing read simulator.A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability.Filtering duplicate reads from 454 pyrosequencing data.XS: a FASTQ read simulator.PBSIM: PacBio reads simulator--toward accurate genome assembly.Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction.Comparative phylobiomic analysis of the bacterial community of water kefir by 16S rRNA gene amplicon sequencing and ARDRA analysis.Empirical assessment of sequencing errors for high throughput pyrosequencing data.Deep sequencing for de novo construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts
P2860
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P2860
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
description
2010 nî lūn-bûn
@nan
2010 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2010 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@ast
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@en
type
label
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@ast
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@en
prefLabel
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@ast
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@en
P2093
P2860
P356
P1433
P1476
Characteristics of 454 pyrosequencing data--enabling realistic simulation with flowsim.
@en
P2093
Animesh Sharma
Ketil Malde
Susanne Balzer
P2860
P304
P356
10.1093/BIOINFORMATICS/BTQ365
P407
P577
2010-09-01T00:00:00Z