Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs
about
Predicting effective microRNA target sites in mammalian mRNAsGlobal RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivoHigh-throughput characterization of protein-RNA interactionsThe mRNA-bound proteome of the human malaria parasite Plasmodium falciparumWnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approachesNovel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticityBoth Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.Computational Methods for CLIP-seq Data Processing.Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Learning to Predict miRNA-mRNA Interactions from AGO CLIP Sequencing and CLASH Data.RNA stores tau reversibly in complex coacervatesTranscriptional regulatory functions of nuclear long noncoding RNAs.Nascent RNA interaction keeps PRC2 activity poised and in check.Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models.Regulation of transcription by long noncoding RNAs.Leveraging cross-link modification events in CLIP-seq for motif discovery.Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.Intramolecular circularization increases efficiency of RNA sequencing and enables CLIP-Seq of nuclear RNA from human cells.BackCLIP: a tool to identify common background presence in PAR-CLIP datasets.Design and bioinformatics analysis of genome-wide CLIP experiments.MicroRNA target prediction using thermodynamic and sequence curvesRobust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks.Inferring RBP-Mediated Regulation in Lung Squamous Cell Carcinoma.DO-RIP-seq to quantify RNA binding sites transcriptome-wide.Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors.Widespread RNA binding by chromatin-associated proteinsModeling the combined effect of RNA-binding proteins and microRNAs in post-transcriptional regulationRbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer.The PUF binding landscape in metazoan germ cells.Biochemical Methods To Investigate lncRNA and the Influence of lncRNA:Protein Complexes on ChromatinRbfox2 controls autoregulation in RNA-binding protein networks.Imaging mRNA and protein interactions within neurons.CLIP: viewing the RNA world from an RNA-protein interactome perspective.Screening the Molecular Framework Underlying Local Dendritic mRNA Translation.RNA Binding to CBP Stimulates Histone Acetylation and Transcription.Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools.Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq.Probing Long Non-coding RNA-Protein Interactions.
P2860
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P2860
Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs
description
2014 nî lūn-bûn
@nan
2014 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2014年の論文
@ja
2014年論文
@yue
2014年論文
@zh-hant
2014年論文
@zh-hk
2014年論文
@zh-mo
2014年論文
@zh-tw
2014年论文
@wuu
name
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@ast
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@en
type
label
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@ast
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@en
prefLabel
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@ast
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@en
P2860
P356
P1433
P1476
Advancing the functional utili ...... d binding to mRNAs and lncRNAs
@en
P2093
Jack D Keene
Matthew B Friedersdorf
P2860
P2888
P356
10.1186/GB-2014-15-1-R2
P577
2014-01-07T00:00:00Z
P5875
P6179
1045930293