doRiNA: a database of RNA interactions in post-transcriptional regulation - Test2 - elhamkhani - TriplyDB

doRiNA: a database of RNA interactions in post-transcriptional regulation

doRiNA: a database of RNA interactions in post-transcriptional regulation

http://www.wikidata.org/entity/Q24623158

about

Predicting effective microRNA target sites in mammalian mRNAs Advances in the techniques for the prediction of microRNA targets Tiny giants of gene regulation: experimental strategies for microRNA functional studies Bioinformatics Resources for MicroRNA Discovery Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression Computational biology of RNA interactions High-throughput characterization of protein-RNA interactions microRNAs and RNA-binding proteins: a complex network of interactions and reciprocal regulations in cancer Integrating Epigenomics into the Understanding of Biomedical Insight Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data A deep learning framework for modeling structural features of RNA-binding protein targets.Site identification in high-throughput RNA-protein interaction data A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information.starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.Computational Methods for CLIP-seq Data Processing.Co-activation of microRNAs by Zelda is essential for early Drosophila development Inferring probabilistic miRNA-mRNA interaction signatures in cancers: a role-switch approach.Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs GraphProt: modeling binding preferences of RNA-binding proteins.Global target mRNA specification and regulation by the RNA-binding protein ZFP36.Differential protein occupancy profiling of the mRNA transcriptome.RBPmap: a web server for mapping binding sites of RNA-binding proteins Pharmaco-miR: linking microRNAs and drug effects.RAID: a comprehensive resource for human RNA-associated (RNA-RNA/RNA-protein) interaction IRBIS: a systematic search for conserved complementarity.The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.Computational Methods for MicroRNA Target Prediction.Fingerprints of a message: integrating positional information on the transcriptome.Landscape and variation of RNA secondary structure across the human transcriptome circBase: a database for circular RNAs.PTRcombiner: mining combinatorial regulation of gene expression from post-transcriptional interaction maps A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models.Finding the target sites of RNA-binding proteins.A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer.CLIPdb: a CLIP-seq database for protein-RNA interactions.A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes.Neuroprotection requires the functions of the RNA-binding protein HuR.

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doRiNA: a database of RNA interactions in post-transcriptional regulation

http://www.wikidata.org/entity/Q24623158

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2012 nî lūn-bûn

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2012 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2012 թվականի հունվարին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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name

doRiNA: a database of RNA interactions in post-transcriptional regulation

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doRiNA: a database of RNA interactions in post-transcriptional regulation

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doRiNA: a database of RNA interactions in post-transcriptional regulation

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Nucleic Acids Research

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doRiNA: a database of RNA interactions in post-transcriptional regulation

@en

P2093

Andreas Kuntzagk

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Christoph Dieterich

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Gerd Anders

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Markus Landthaler

http://www.w3.org/2001/XMLSchema#string

Marvin Jens

http://www.w3.org/2001/XMLSchema#string

Sebastian D Mackowiak

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P2860

A Pumilio-induced RNA structure switch in p27-3' UTR controls miR-221 and miR-222 accessibility

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

MicroRNAs: target recognition and regulatory functions

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data

The UCSC Genome Browser database: update 2011

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

microRNA target predictions across seven Drosophila species and comparison to mammalian targets

Combinatorial microRNA target predictions

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

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D180-6

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scholarly article

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10.1093/NAR/GKR1007

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Database issue

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40

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Nikolaus Rajewsky

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2012-01-01T00:00:00Z

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51800142

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22086949

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3245013

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