SUPERFAMILY 1.75 including a domain-centric gene ontology method - Test2 - elhamkhani - TriplyDB

SUPERFAMILY 1.75 including a domain-centric gene ontology method

SUPERFAMILY 1.75 including a domain-centric gene ontology method

http://www.wikidata.org/entity/Q33742951

about

dcGOR: an R package for analysing ontologies and protein domain annotations SCOP2 prototype: a new approach to protein structure mining Classification of intrinsically disordered regions and proteins The InterPro protein families database: the classification resource after 15 years InterProScan 5: genome-scale protein function classification HMMER web server: interactive sequence similarity searching The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection A large-scale evaluation of computational protein function prediction InterPro in 2011: new developments in the family and domain prediction database The `dnet’ approach promotes emerging research on cancer patient survival SIFTS: Structure Integration with Function, Taxonomy and Sequences resource Morphogenesis of Plasmodium zoites is uncoupled from tensile strength.Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps.Study of intra-inter species protein-protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277-11.Assessment of template based protein structure predictions in CASP9.The SUPERFAMILY 1.75 database in 2014: a doubling of data.Global patterns of protein domain gain and loss in superkingdoms Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.Aberrant coordination geometries discovered in the most abundant metalloproteins.InlL from Listeria monocytogenes Is Involved in Biofilm Formation and Adhesion to Mucin The evolution of human cells in terms of protein innovation.Hemoglobins in the genome of the cryptomonad Guillardia theta.DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more Protein domains of unknown function are essential in bacteria.D²P²: database of disordered protein predictions.A disease-drug-phenotype matrix inferred by walking on a functional domain network.A domain-centric solution to functional genomics via dcGO Predictor A daily-updated tree of (sequenced) life as a reference for genome research.Concomitant prediction of function and fold at the domain level with GO-based profiles CLCAs - a family of metalloproteases of intriguing phylogenetic distribution and with cases of substituted catalytic sites.Transcription factors in Escherichia coli prefer the holo conformation DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.Effective moment feature vectors for protein domain structures Bioinformatics on the cloud computing platform Azure.Gene loss rather than gene gain is associated with a host jump from monocots to dicots in the Smut Fungus Melanopsichium pennsylvanicum.Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins

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SUPERFAMILY 1.75 including a domain-centric gene ontology method

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2010 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2010 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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David A de Lima Morais

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Derek Wilson

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Ralph Pethica

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TreeVector: scalable, interactive, phylogenetic trees for the web

The Protein Data Bank

The Pfam protein families database

DBD--taxonomically broad transcription factor predictions: new content and functionality

InterPro: the integrative protein signature database

GO PaD: the Gene Ontology Partition Database

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

The case for cloud computing in genome informatics

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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