RBPmap: a web server for mapping binding sites of RNA-binding proteins - Test2 - elhamkhani - TriplyDB

RBPmap: a web server for mapping binding sites of RNA-binding proteins

RBPmap: a web server for mapping binding sites of RNA-binding proteins

http://www.wikidata.org/entity/Q33860779

about

Advances in the characterization of RNA-binding proteins POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.Bioinformatic tools for analysis of CLIP ribonucleoprotein data ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins.A birth of bipartite exon by intragenic deletion A pan-cancer analysis of alternative splicing events reveals novel tumor-associated splice variants of matriptase.Targeting SR proteins improves SMN expression in spinal muscular atrophy cells.Ribonomic approaches to study the RNA-binding proteome.The RNA-binding protein Rbfox1 regulates splicing required for skeletal muscle structure and function.Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.Identification of mRNA isoform switching in breast cancer.HnRNP Q Has a Suppressive Role in the Translation of Mouse Cryptochrome1.RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information.Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells Nuclear Retention of mRNA in Mammalian Tissues Widespread RNA binding by chromatin-associated proteins Comprehensive identification of internal structure and alternative splicing events in circular RNAs Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals.How motif environment influences transcription factor search dynamics: Finding a needle in a haystack Control of embryonic stem cell self-renewal and differentiation via coordinated alternative splicing and translation of YY2 Alternative splicing of U2AF1 reveals a shared repression mechanism for duplicated exons.Revealing protein-lncRNA interaction Deciphering common recognition principles of nucleoside mono/di and tri-phosphates binding in diverse proteins via structural matching of their binding sites.ELAVL2-regulated transcriptional and splicing networks in human neurons link neurodevelopment and autism.Regulation of Stem Cell Self-Renewal and Oncogenesis by RNA-Binding Proteins.Clearance of Maternal RNAs: Not a Mummy's Embryo Anymore.ORF57 overcomes the detrimental sequence bias of Kaposi's sarcoma-associated herpesvirus lytic genes.Dysregulation of Alternative Poly-adenylation as a Potential Player in Autism Spectrum Disorder Sequence-Based Prediction of RNA-Binding Residues in Proteins.Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation.RNAStructuromeDB: A genome-wide database for RNA structural inference.Conjunction of potential G-quadruplex and adjacent cis-elements in the 5' UTR of hepatocyte nuclear factor 4-alpha strongly inhibit protein expression.The combinatorial control of alternative splicing in C. elegans.Global Transcriptome Analysis of RNA Abundance Regulation by ADAR in Lung Adenocarcinoma.Post-transcriptional Regulation of De Novo Lipogenesis by mTORC1-S6K1-SRPK2 Signaling.Disease of mRNA Regulation: Relevance for Ischemic Brain Injury.Cholinergic Surveillance over Hippocampal RNA Metabolism and Alzheimer's-Like Pathology.

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RBPmap: a web server for mapping binding sites of RNA-binding proteins

http://www.wikidata.org/entity/Q33860779

description

2014 nî lūn-bûn

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2014 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2014 թվականի մայիսին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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RBPmap: a web server for mapping binding sites of RNA-binding proteins

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RBPmap: a web server for mapping binding sites of RNA-binding proteins

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RBPmap: a web server for mapping binding sites of RNA-binding proteins

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Nucleic Acids Research

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RBPmap: a web server for mapping binding sites of RNA-binding proteins

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Idit Kosti

http://www.w3.org/2001/XMLSchema#string

Inbal Paz

http://www.w3.org/2001/XMLSchema#string

Melissa Cline

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Yael Mandel-Gutfreund

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P2860

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

doRiNA: a database of RNA interactions in post-transcriptional regulation

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

BLAT--the BLAST-like alignment tool

Using RNA secondary structures to guide sequence motif finding towards single-stranded regions

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W361-7

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Web Server issue

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42

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2014-05-14T00:00:00Z

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262342425

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4086114

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