SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
about
Staphylococcus aureus RNAIII binds to two distant regions of coa mRNA to arrest translation and promote mRNA degradationBacterial aptamers that selectively bind glutamineDissecting RNA folding by nucleotide analog interference mapping (NAIM)Automated 3D structure composition for large RNAsThe structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamerRiboswitches that sense S-adenosylhomocysteine and activate genes involved in coenzyme recyclingCoarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filtersEvidence of a novel RNA secondary structure in the coding region of HIV-1 pol geneDMS footprinting of structured RNAs and RNA-protein complexestRNA–mRNA mimicry drives translation initiation from a viral IRESMolecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selectionNucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine RiboswitchStructure of a class II preQ1 riboswitch reveals ligand recognition by a new foldDNA binding by the plant-specific NAC transcription factors in crystal and solution: a firm link to WRKY and GCM transcription factorsA G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophoreActivation of picornaviral IRESs by PTB shows differential dependence on each PTB RNA-binding domainThe rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNAIntegrating chemical footprinting data into RNA secondary structure predictionSharing and archiving nucleic acid structure mapping dataFunction and structural organization of Mot1 bound to a natural target promoter.Snf2/Swi2-related ATPase Mot1 drives displacement of TATA-binding protein by gripping DNALocal RNA structural changes induced by crystallization are revealed by SHAPERNA recognition by the DNA end-binding Ku heterodimer.Sequence-specific ultrasonic cleavage of DNATuning a riboswitch response through structural extension of a pseudoknot.Computational analysis of RNA structures with chemical probing data.Classification of RNA structure change by 'gazing' at experimental data.Evaluation of the information content of RNA structure mapping data for secondary structure prediction.The Simbios National Center: Systems Biology in Motion.Protein roles in group I intron RNA folding: the tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics.Polypyrimidine tract-binding protein stimulates the poliovirus IRES by modulating eIF4G binding.An upstream Hfq binding site in the fhlA mRNA leader region facilitates the OxyS-fhlA interaction.Rapid quantification and analysis of kinetic •OH radical footprinting data using SAFA.Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.A promoter-proximal transcript targeted by genetic polymorphism controls E-cadherin silencing in human cancers.Atomic accuracy in predicting and designing noncanonical RNA structure.A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNAStructural specificity conferred by a group I RNA peripheral element.Coordinated DNA dynamics during the human telomerase catalytic cycle.Multiple unfolding events during native folding of the Tetrahymena group I ribozyme
P2860
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P2860
SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
description
2005 nî lūn-bûn
@nan
2005 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի մարտին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
SAFA: semi-automated footprint ...... acid footprinting experiments
@ast
SAFA: semi-automated footprint ...... acid footprinting experiments
@en
SAFA: semi-automated footprint ...... acid footprinting experiments
@nl
type
label
SAFA: semi-automated footprint ...... acid footprinting experiments
@ast
SAFA: semi-automated footprint ...... acid footprinting experiments
@en
SAFA: semi-automated footprint ...... acid footprinting experiments
@nl
prefLabel
SAFA: semi-automated footprint ...... acid footprinting experiments
@ast
SAFA: semi-automated footprint ...... acid footprinting experiments
@en
SAFA: semi-automated footprint ...... acid footprinting experiments
@nl
P2860
P50
P356
P1433
P1476
SAFA: semi-automated footprint ...... acid footprinting experiments
@en
P2093
Daniel Herschlag
Samuel M Pearlman
P2860
P304
P356
10.1261/RNA.7214405
P407
P577
2005-03-01T00:00:00Z