Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. - Test2 - elhamkhani - TriplyDB

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.

http://www.wikidata.org/entity/Q34210429

about

Mass spectrometry for translational proteomics: progress and clinical implications Critical role of acetylation in tau-mediated neurodegeneration and cognitive deficits Hypoxia regulates global membrane protein endocytosis through caveolin-1 in cancer cells.Chasing Phosphoarginine Proteins: Development of a Selective Enrichment Method Using a Phosphatase Trap The complete structure of the large subunit of the mammalian mitochondrial ribosome Structure of the poly-C9 component of the complement membrane attack complex Toxicoproteomic analysis of pulmonary carbon nanotube exposure using LC-MS/MS Trade-Off between Growth and Carbohydrate Accumulation in Nutrient-Limited Arthrospira sp. PCC 8005 Studied by Integrating Transcriptomic and Proteomic Approaches SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective Isolation, N-glycosylations and Function of a Hyaluronidase-Like Enzyme from the Venom of the Spider Cupiennius salei.Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling.Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors Label-Free Quantitation and Mapping of the ErbB2 Tumor Receptor by Multiple Protease Digestion with Data-Dependent (MS1) and Data-Independent (MS2) Acquisitions.Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA).DeMix-Q: Quantification-Centered Data Processing Workflow.Data-driven modeling reconciles kinetics of ERK phosphorylation, localization, and activity states.Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition Whole cell, label free protein quantitation with data independent acquisition: quantitation at the MS2 level.Data-independent MS/MS quantification of neuropeptides for determination of putative feeding-related neurohormones in microdialysate.MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments.Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows.Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor.Synchrotron X-ray footprinting as a method to visualize water in proteins.Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH)How may targeted proteomics complement genomic data in breast cancer?Implementation of statistical process control for proteomic experiments via LC MS/MS The Rational Design of Therapeutic Peptides for Aminopeptidase N using a Substrate-Based Approach.Cross-species proteomics reveals specific modulation of signaling in cancer and stromal cells by phosphoinositide 3-kinase (PI3K) inhibitors Isocitrate Dehydrogenase Mutations Confer Dasatinib Hypersensitivity and SRC Dependence in Intrahepatic Cholangiocarcinoma Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae.Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells.Panorama: a targeted proteomics knowledge base Site-specific mapping and quantification of protein S-sulphenylation in cells.An adaptive alignment algorithm for quality-controlled label-free LC-MS.Mechanisms of In Vivo Ribosome Maintenance Change in Response to Nutrient Signals.Protein analysis by shotgun/bottom-up proteomics Stable nuclear expression of ATP8 and ATP6 genes rescues a mtDNA Complex V null mutant Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus Oncogene mimicry as a mechanism of primary resistance to BRAF inhibitors

P2860

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P2860

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.

http://www.wikidata.org/entity/Q34210429

description

2012 nî lūn-bûn

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2012 թուականի Մարտին հրատարակուած գիտական յօդուած

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2012 թվականի մարտին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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type

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Platform-independent and label ...... etylation and phosphorylation.

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Molecular & Cellular Proteomics

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Platform-independent and label ...... etylation and phosphorylation.

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Anna M Zawadzka

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Barbara E Frewen

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Birgit Schilling

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Bradford W Gibson

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Brendan X MacLean

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Christine C Wu

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Dylan J Sorensen

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Enxuan Jing

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Matthew J Rardin

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Michael J Maccoss

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P2860

A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

Quantitative mass spectrometry in proteomics: a critical review

Rapid identification of proteins by peptide-mass fingerprinting

Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

Breast cancer metastasis: markers and models

Sirt3 mediates reduction of oxidative damage and prevention of age-related hearing loss under caloric restriction

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202-214

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10.1074/MCP.M112.017707

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5

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phosphorylation

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3418851

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