EcoCyc: fusing model organism databases with systems biology. - Test2 - elhamkhani - TriplyDB

EcoCyc: fusing model organism databases with systems biology.

EcoCyc: fusing model organism databases with systems biology.

http://www.wikidata.org/entity/Q34311072

about

SMPDB 2.0: big improvements to the Small Molecule Pathway Database Genome degeneration and adaptation in a nascent stage of symbiosis Comparative genomics boosts target prediction for bacterial small RNAs How much does curation cost?The healthy human microbiome A Glimpse to Background and Characteristics of Major Molecular Biological Networks Shikimic Acid Production in Escherichia coli: From Classical Metabolic Engineering Strategies to Omics Applied to Improve Its Production Spatiotemporal microbial evolution on antibiotic landscapes Cellular Growth Arrest and Persistence from Enzyme Saturation BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference.MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics The Tip of the Iceberg: On the Roles of Regulatory Small RNAs in the Virulence of Enterohemorrhagic and Enteropathogenic Escherichia coli Can we replace curation with information extraction software?Using Genome-scale Models to Predict Biological Capabilities The target spectrum of SdsR small RNA in Salmonella Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage NrdR Transcription Regulation: Global Proteome Analysis and Its Role in Escherichia coli Viability and Virulence How Archiving by Freezing Affects the Genome-Scale Diversity of Escherichia coli Populations Markovian language model of the DNA and its information content Lean-proteome strains - next step in metabolic engineering Coupling between noise and plasticity in E. coli Self-regulated 1-butanol production in Escherichia coli based on the endogenous fermentative control Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond Relation between chemotaxis and consumption of amino acids in bacteria Reinventing the Wheel and Making It Round Again: Evolutionary Convergence in Buchnera-Serratia Symbiotic Consortia between the Distantly Related Lachninae Aphids Tuberolachnus salignus and Cinara cedri Identification of Preferred DNA-Binding Sites for the Thermus thermophilus Transcriptional Regulator SbtR by the Combinatorial Approach REPSA Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments.The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection.Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli.PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model.Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.Undergraduate Biocuration: Developing Tomorrow's Researchers While Mining Today's Data Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality.COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains

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EcoCyc: fusing model organism databases with systems biology.

http://www.wikidata.org/entity/Q34311072

description

2012 nî lūn-bûn

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2012 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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EcoCyc: fusing model organism databases with systems biology.

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EcoCyc: fusing model organism databases with systems biology.

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EcoCyc: fusing model organism databases with systems biology.

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EcoCyc: fusing model organism databases with systems biology.

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Nucleic Acids Research

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Alexander G Shearer

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Amanda Mackie

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Anamika Kothari

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Araceli M Huerta

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Carol Fulcher

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César Bonavides-Martínez

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Deepika Weerasinghe

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Imke Schröder

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Ingrid M Keseler

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Luis Muñiz-Rascado

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

TCDB: the Transporter Classification Database for membrane transport protein analyses and information.

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

The complete genome sequence of Escherichia coli K-12

Multicopy suppression underpins metabolic evolvability

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Control of bacterial transcription, translation and replication by (p)ppGpp

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10.1093/NAR/GKS1027

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Database issue

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41

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Julio Collado-Vides

Martin Peralta-Gil

Alberto Santos-Zavaleta

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