Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
about
A user's guide to the encyclopedia of DNA elements (ENCODE)Isoform diversity and regulation in peripheral and central neurons revealed through RNA-SeqAutomated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencerSystematic clustering of transcription start site landscapesUnexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cellsConserved role of intragenic DNA methylation in regulating alternative promotersRNA sequencing: advances, challenges and opportunitiesRemodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitorsA paired-end sequencing strategy to map the complex landscape of transcription initiation.Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model.CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analysesBAI1 regulates spatial learning and synaptic plasticity in the hippocampusMethods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approachesTranscriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.Expression of distinct RNAs from 3' untranslated regions.Whole transcriptome analysis: what are we still missing?5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genesLinking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs.Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.RNA sequencing: from tag-based profiling to resolving complete transcript structure.Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules.Differential regulation of non-protein coding RNAs from Prader-Willi Syndrome locus.Metazoan promoters: emerging characteristics and insights into transcriptional regulation.RNA-Seq and human complex diseases: recent accomplishments and future perspectives.Bivalent-like chromatin markers are predictive for transcription start site distribution in humanHuman nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.Genome-wide analysis of promoter architecture in Drosophila melanogaster.Asynchronous replication, mono-allelic expression, and long range Cis-effects of ASAR6.Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2.NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements.Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology.Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.Genetic variant rs17225178 in the ARNT2 gene is associated with Asperger Syndrome
P2860
Q21092716-E128A4B5-B28F-4015-9192-0EC53FF95F0CQ21134805-6A47ABD0-DB25-4B18-9D35-21C4A3C54209Q21560874-393EEEC8-9688-4EAC-BDB5-9193ED0A224CQ21560932-A0A7BCD8-7E03-4291-9A5E-8F57635C94BCQ24646565-81C5C341-CC39-4799-A40B-674785BD6687Q29616289-EFDCA1ED-FA38-4E5C-99B3-9A87EC9B3550Q29619605-E91A2DA6-7B32-4B65-BA8C-0309E887D581Q30395908-96E8685D-50B4-422A-90F5-9E966A5940B2Q30430247-C00AC0F3-ECA1-4FA3-99BC-5AC26C170E3BQ30564048-EF1938DD-6F90-43D1-8A43-E2F4AE3EC823Q30887790-5C3951DB-CA23-4EC9-8888-F9F241A1ECB3Q33112266-B57397AB-AA0F-4A5B-89CD-C63ADDE356D3Q33485579-4F069206-CA07-483F-8778-9BDE9FB43416Q33561283-A9DAFBEC-DC69-4FF9-84E6-BC58D6474D94Q33565273-3FE69166-147C-4A03-88E8-DEE27CE2B597Q33605862-F7DA0427-9149-40C4-98FE-E3BEE6052917Q33628366-B2159796-1543-4568-BA89-4444CF0BE442Q33642251-2C461772-5AB4-4953-BC12-310BDE1EB8A7Q33736486-94FF6B22-4A6D-481B-8449-DF56B8897B9AQ33746260-CF8EC5FB-E686-4060-812C-315DB9F1F0AAQ33783513-B4CE3732-DB76-4C32-AF8A-614C31454B7DQ33889403-6492922C-CE59-47DB-9232-63C59256D1C4Q33899166-CCFBFC24-9B72-4E3C-97B8-1B2DD541867CQ34003605-35F0996F-C2AE-4954-AC8E-E80605E2662CQ34028548-2F957865-C8AB-48C6-8338-E8C8D24C8A7AQ34065439-53D1A399-ACF6-4B14-A519-9D79BFBC6D05Q34085158-2F52B141-641D-4375-BD98-4D0B3CA3457FQ34168974-7F8F2AF0-301F-4102-8BA5-FEC61345FFC7Q34228077-C71C0E0E-A5FC-4903-B763-3736A91FDE4CQ34258857-FA65D2EA-430C-43FD-BA8F-1332652DE520Q34284546-73B03340-4188-450C-8132-0BC333F5927BQ34327987-C844CECC-D540-4047-8733-0A18EE975671Q34518964-EA596CC6-B889-4A10-BEAB-0AA756C82D93Q34548248-B3F4C955-1A6F-4F17-87E3-87BE64BC61D0Q34671981-0330BD9F-59C8-45F0-BCAF-AC55FE184295Q34679006-636DC66F-EB88-4EF5-83FC-210C58258995Q35112224-76B86DDF-A9F1-4EB6-8CA9-58245C492A21Q35115646-D8603887-1077-41C9-B7B8-6DD013168CCDQ35133686-B9DF091F-1764-47DB-B9BB-136448490E99Q35151420-0B85B40B-45F0-4211-814D-225523C4D6E7
P2860
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
description
2008 nî lūn-bûn
@nan
2008 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի դեկտեմբերին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@ast
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@en
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@nl
type
label
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@ast
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@en
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@nl
prefLabel
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@ast
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@en
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@nl
P2093
P2860
P50
P356
P1433
P1476
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
@en
P2093
Chika Kawazu
Giovanni Pascarella
Hiromi Nishiyori
Miki Kojima
Mitsuyoshi Murata
Norihiro Maeda
Stefano Gustincich
Takahiro Arakawa
Xiaobei Zhao
P2860
P304
P356
10.1101/GR.084541.108
P50
P577
2008-12-11T00:00:00Z