Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. - Test2 - elhamkhani - TriplyDB

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

http://www.wikidata.org/entity/Q34901415

about

A user's guide to the encyclopedia of DNA elements (ENCODE)Isoform diversity and regulation in peripheral and central neurons revealed through RNA-Seq Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer Systematic clustering of transcription start site landscapes Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells Conserved role of intragenic DNA methylation in regulating alternative promoters RNA sequencing: advances, challenges and opportunities Remodeling of retrotransposon elements during epigenetic induction of adult visual cortical plasticity by HDAC inhibitors A paired-end sequencing strategy to map the complex landscape of transcription initiation.Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model.CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses BAI1 regulates spatial learning and synaptic plasticity in the hippocampus Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approaches Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies.RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.Expression of distinct RNAs from 3' untranslated regions.Whole transcriptome analysis: what are we still missing?5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.Histone modification profiles are predictive for tissue/cell-type specific expression of both protein-coding and microRNA genes Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.Long non-coding RNA modifies chromatin: epigenetic silencing by long non-coding RNAs.Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.RNA sequencing: from tag-based profiling to resolving complete transcript structure.Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules.Differential regulation of non-protein coding RNAs from Prader-Willi Syndrome locus.Metazoan promoters: emerging characteristics and insights into transcriptional regulation.RNA-Seq and human complex diseases: recent accomplishments and future perspectives.Bivalent-like chromatin markers are predictive for transcription start site distribution in human Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.Genome-wide analysis of promoter architecture in Drosophila melanogaster.Asynchronous replication, mono-allelic expression, and long range Cis-effects of ASAR6.Identification of TNF-α-responsive promoters and enhancers in the intestinal epithelial cell model Caco-2.NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements.Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology.Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.Genetic variant rs17225178 in the ARNT2 gene is associated with Asperger Syndrome

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Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

http://www.wikidata.org/entity/Q34901415

description

2008 nî lūn-bûn

@nan

2008 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2008 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@ast

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@en

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@nl

type

label

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

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Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@en

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@nl

prefLabel

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@ast

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@en

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

@nl

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Genome Research

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Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.

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Chika Kawazu

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Giovanni Pascarella

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Hiromi Nishiyori

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Jun Kawai

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Miki Kojima

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Mitsuyoshi Murata

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Norihiro Maeda

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Stefano Gustincich

http://www.w3.org/2001/XMLSchema#string

Takahiro Arakawa

http://www.w3.org/2001/XMLSchema#string

Xiaobei Zhao

http://www.w3.org/2001/XMLSchema#string

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Asap: a framework for over-representation statistics for transcription factor binding sites

Genetic neuroscience of mammalian learning and memory

A functional role of postsynaptic density-95-guanylate kinase-associated protein complex in regulating Shank assembly and stability to synapses

Genome sequencing in microfabricated high-density picolitre reactors

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

Cluster analysis and display of genome-wide expression patterns

Specific expression of long noncoding RNAs in the mouse brain

GKAP, a novel synaptic protein that interacts with the guanylate kinase-like domain of the PSD-95/SAP90 family of channel clustering molecules

A new generation of JASPAR, the open-access repository for transcription factor binding site profiles

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255-265

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scholarly article

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10.1101/GR.084541.108

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2

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19

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Yoshihide Hayashizaki

Troels Marstrand

Man-Hung Eric Tang

Matthias Harbers

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2008-12-11T00:00:00Z

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23655267

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19074369

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2652207

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