Effects of sequence variation on differential allelic transcription factor occupancy and gene expression. - Test2 - elhamkhani - TriplyDB

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

http://www.wikidata.org/entity/Q35914852

about

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association Using epigenetic mechanisms to understand the impact of common disease causing alleles The Effects of Sequence Variation on Genome-wide NRF2 Binding--New Target Genes and Regulatory SNPs Removing reference mapping biases using limited or no genotype data identifies allelic differences in protein binding at disease-associated loci.A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes.Transversions have larger regulatory effects than transitions.Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era Extensive variation in chromatin states across humans.Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort.RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.Evolution of transcription factor binding in metazoans - mechanisms and functional implications.Cooperativity and rapid evolution of cobound transcription factors in closely related mammals Genomics meets proteomics: identifying the culprits in disease.iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets Human active X-specific DNA methylation events showing stability across time and tissues Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome.Genetic, functional and molecular features of glucocorticoid receptor binding Global properties and functional complexity of human gene regulatory variation Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways.QuASAR: quantitative allele-specific analysis of reads.Populational landscape of INDELs affecting transcription factor-binding sites in humans.Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information.Genomic approaches for understanding the genetics of complex disease.BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes.BEESEM: estimation of binding energy models using HT-SELEX data.Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments.Breast cancer risk-associated SNPs modulate the affinity of chromatin for FOXA1 and alter gene expression Nucleosome mapping across the CFTR locus identifies novel regulatory factors.Function and evolution of local repeats in the Firre locus.Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease Risk.A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity.Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium.[corrected].YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses High-throughput allele-specific expression across 250 environmental conditions.

P2860

Q21563285-B6FB5A51-CBD3-4163-832C-216AE7D218F6 Q27023289-A75CC653-EA2B-4694-B559-4CCC881E71D3 Q28388133-CCCE717D-3C5C-4337-9378-124BB5B5AAB3 Q30982599-5E172A39-AA17-4ADB-9FB0-3886FF85A8BF Q31040539-B44A45DB-28B6-405F-8422-BE1CEA90690D Q33709223-BAD5871F-DB22-47E8-953D-E5E6E8D1CADC Q33814873-34238C06-EE1D-4D72-8423-092E7BB9E516 Q33823781-F0489FF3-3FCA-4A51-A493-D26B9981A8A6 Q33886586-98EFBB7F-E795-4976-A5EB-FA089672A956 Q34044279-6FB6E5AE-12A2-4C4A-8FEC-279220847DE2 Q34243017-A0217B98-8172-49F3-B14A-78C79CB4F81F Q34245588-CC06E215-DE0A-4A45-9DE9-E6AD2351506B Q34361479-C44829B2-07E3-4D64-823E-28AF19B87C0A Q34378398-63669A78-7658-446C-9F98-BD1195D23E15 Q34495526-D95E076F-B6FB-41BF-A5B4-9AF7CF3CC4F0 Q34508244-57DF0F52-79D2-4A0D-B7DC-B9A9FCD08F80 Q34538619-F4ABE20A-7D2B-498B-93E1-EB3E87B763A1 Q34700511-ECD55D71-D89A-4A2E-B93B-E9935E3D19D5 Q34758225-A40DE07C-29AD-4981-BFE3-97798FD27CE0 Q34987014-752160EC-E187-4ACB-AE91-C128D73A504D Q35176534-6E01F32E-A56A-45EE-A9F3-990AA2413C77 Q35367079-9F75261B-DF19-47DC-AE34-53FAA27E3858 Q35700793-FD5E205B-8785-4DED-B964-8924386FAA98 Q35876055-284B76CD-0DA0-4881-8339-143803329392 Q35926580-4F5C3164-537F-4E51-8005-F3A14ABBA223 Q36084287-AF04A1CC-8DF8-4055-AADE-F744034BAAEC Q36290465-A6BDB3F9-C8E9-4548-A15C-9186004D4EB2 Q36335526-A77FAB24-80A9-4CA9-993D-AC55AB769ECE Q36338647-D7B82EFE-325F-4A03-967F-635F654047BE Q36344543-A12F1870-F8BE-4D9B-ACAE-6E34A21E3665 Q36354441-B4666B59-296B-4627-8DFF-330D4265762C Q36684772-EA264E00-CF15-46C2-ADB9-8F75A82D3628 Q36765155-F30D748F-D25B-44AC-9765-E17129EBB19D Q36800430-4A7E7091-3EC2-4E61-9C41-4F6C89959D82 Q36828596-07E026EA-A9AC-468C-B49E-8A34E283DC92 Q36889300-B58721B9-8F9F-4E63-AD01-3D622FC8250B Q36891490-881F7745-D86E-4ACA-8E38-CE1E11D959C1 Q36915469-4F32A114-AD46-4BB5-8CD1-7A7B90661BA5 Q37421865-AA68D8AA-BBC5-4D34-8E6F-E6F42AC5A322 Q37461558-57ABFE4A-D3AC-4555-B839-C00424F12ACE

P2860

Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.

http://www.wikidata.org/entity/Q35914852

description

2012 nî lūn-bûn

@nan

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

2012年论文

@zh

2012年论文

@zh-cn

name

Effects of sequence variation ...... occupancy and gene expression.

@ast

Effects of sequence variation ...... occupancy and gene expression.

@en

type

label

Effects of sequence variation ...... occupancy and gene expression.

@ast

Effects of sequence variation ...... occupancy and gene expression.

@en

prefLabel

Effects of sequence variation ...... occupancy and gene expression.

@ast

Effects of sequence variation ...... occupancy and gene expression.

@en

P1433

Q35914852-2A783EAA-9D9B-4010-BE94-DB6D38155A96

P1476

Q35914852-AF9ED712-ED97-45FF-A030-9653D9E64643

P2093

Q35914852-041F42E8-018D-40A6-95E0-B1FE0A912051

Q35914852-29B798EA-1ADE-49D7-908E-804FD3C35F6A

Q35914852-497D076B-E2EA-4068-A3AF-B1164D6E23AE

Q35914852-7F064F88-F3CE-4DE0-8E17-00408F855C84

Q35914852-94F25C8A-2C85-4BFF-8BD4-8F40FFE16BC2

Q35914852-B62E726C-5B8E-4A3B-8B01-A9CB39527CAC

Q35914852-B6BDA33A-C1BD-42A1-9948-B45CB4744D84

Q35914852-C2C4C0E0-41AA-42FA-B52F-E430F55768BA

Q35914852-C3C20353-9FF3-40AE-BB80-A83DD904CDEC

Q35914852-C3F145D6-EB9A-4E49-AB19-E31D40ADB882

P2860

Q35914852-02DB6B46-6AF3-4713-81E2-FA8492632F64

Q35914852-04E356FD-06EF-497E-B840-09F6A24809E7

Q35914852-08C7A17B-DA25-4445-B744-663E175A7BEF

Q35914852-097529AE-0955-4E08-89C3-D22AA0B9A52D

Q35914852-0A30B80F-AD68-45DE-B86D-15CCC4AF5A62

Q35914852-13522DFE-92E5-4E97-97FF-1F93CA2F5F06

Q35914852-13EEB5D1-8978-4FA3-A221-3BCBF8A34316

Q35914852-16D555E1-8395-4356-A834-EA362C189316

Q35914852-1AEF7C74-B4C4-440C-9AD7-F1D0BCC8B383

Q35914852-212FB0A7-4B45-4666-B94E-9324C1F44684

P304

Q35914852-4DFFD7D6-8C35-4DDF-8E6A-8BEDD1FE64BB

P31

Q35914852-637EACB2-6811-499B-BA2B-0BD38C8E9908

P356

Q35914852-8D3AFC00-86A9-466C-A101-93AF1E908EEA

P433

Q35914852-E563F862-B9FC-48BB-AEEE-1005DF6E855E

P478

Q35914852-9590E99A-B2B2-45AE-B5DE-A4B3FB111338

P50

Q35914852-2373A3C9-0918-4A4A-B4CE-DA59A40898F6

Q35914852-8BAEC5C8-9ECE-4498-997E-D88BEA321992

Q35914852-BCDDFB29-F0C8-4617-8916-FFD5A541C102

P577

Q35914852-4F9CEE26-CD3A-4B34-91F7-73347D09EE50

P5875

Q35914852-4D04B87A-69FD-4A61-980A-6CE093BA5FAA

P698

Q35914852-813ECB1D-CFA9-4A96-83C9-7F4042035756

P932

Q35914852-F3A6574D-9D1A-4720-9690-7B3E8361BA16

P356

P1433

Genome Research

P1476

Effects of sequence variation ...... occupancy and gene expression.

@en

P2093

Ali Mortazavi

http://www.w3.org/2001/XMLSchema#string

Barbara Wold

http://www.w3.org/2001/XMLSchema#string

Brian A Williams

http://www.w3.org/2001/XMLSchema#string

Florencia Pauli

http://www.w3.org/2001/XMLSchema#string

Huntington F Willard

http://www.w3.org/2001/XMLSchema#string

Katerina S Kucera

http://www.w3.org/2001/XMLSchema#string

Katherine E Varley

http://www.w3.org/2001/XMLSchema#string

Kimberly M Newberry

http://www.w3.org/2001/XMLSchema#string

Lingyun Song

http://www.w3.org/2001/XMLSchema#string

Richard M Myers

http://www.w3.org/2001/XMLSchema#string

P2860

A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

Mapping and quantifying mammalian transcriptomes by RNA-Seq

X-inactivation profile reveals extensive variability in X-linked gene expression in females

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Multiple common variants for celiac disease influencing immune gene expression

A map of human genome variation from population-scale sequencing

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

P304

860-869

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1101/GR.131201.111

http://www.w3.org/2001/XMLSchema#string

P433

5

http://www.w3.org/2001/XMLSchema#string

P478

22

http://www.w3.org/2001/XMLSchema#string

P50

Georgi K Marinov

Gregory E Crawford

P577

2012-02-02T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

221801624

http://www.w3.org/2001/XMLSchema#string

P698

22300769

http://www.w3.org/2001/XMLSchema#string

P932

3337432

http://www.w3.org/2001/XMLSchema#string