Computational prediction of sRNAs and their targets in bacteria.
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Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arraysNAPP: the Nucleic Acid Phylogenetic Profile DatabaseComparative genomics boosts target prediction for bacterial small RNAssRNATarBase: a comprehensive database of bacterial sRNA targets verified by experimentsRegulation by small RNAs in bacteria: expanding frontiersTranscriptome complexity and riboregulation in the human pathogen Helicobacter pyloriIdentification of novel regulatory small RNAs in Acinetobacter baumanniiCopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domainsGenome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory functionA conserved RpoS-dependent small RNA controls the synthesis of major porin OmpDBioinformatics of prokaryotic RNAsRNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"Quantifying the sequence-function relation in gene silencing by bacterial small RNAsAn antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease.TargetRNA2: identifying targets of small regulatory RNAs in bacteriaIdentification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi.An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs.Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein.Novel regulatory small RNAs in Streptococcus pyogenes.Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity.An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions.Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regionsAssessing computational tools for the discovery of small RNA genes in bacteriaFunctional characterization of bacterial sRNAs using a network biology approachSmall RNA Transcriptome of the Oral Microbiome during Periodontitis Progression.Computational prediction of efficient splice sites for trans-splicing ribozymes.Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networksDifferentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq - ryhB encodes the regulatory RNA RyhB and a peptide, RyhPIdentification of bacterial sRNA regulatory targets using ribosome profiling.Predicting sRNAs and their targets in bacteria.Small Antisense RNA RblR Positively Regulates RuBisCo in Synechocystis sp. PCC 6803Towards the complete small RNome of Acinetobacter baumannii.cis-antisense RNA, another level of gene regulation in bacteria.Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species.Computational approaches to discovering noncoding RNA.Riboregulators and the role of Hfq in photosynthetic bacteria.Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.The delta subunit of RNA polymerase, RpoE, is a global modulator of Streptococcus mutans environmental adaptation.An assessment of bacterial small RNA target prediction programs
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Computational prediction of sRNAs and their targets in bacteria.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on 13 January 2010
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Computational prediction of sRNAs and their targets in bacteria.
@en
Computational prediction of sRNAs and their targets in bacteria.
@nl
type
label
Computational prediction of sRNAs and their targets in bacteria.
@en
Computational prediction of sRNAs and their targets in bacteria.
@nl
prefLabel
Computational prediction of sRNAs and their targets in bacteria.
@en
Computational prediction of sRNAs and their targets in bacteria.
@nl
P356
P1433
P1476
Computational prediction of sRNAs and their targets in bacteria
@en
P2093
Rolf Backofen
P356
10.4161/RNA.7.1.10655
P577
2010-01-13T00:00:00Z