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ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing dataGlycosylations in the globular head of the hemagglutinin protein modulate the virulence and antigenic properties of the H1N1 influenza virusesError correction of next-generation sequencing data and reliable estimation of HIV quasispecies.Read length versus depth of coverage for viral quasispecies reconstructionHigh-throughput sequencing of human immunoglobulin variable regions with subtype identification.Deep sequencing of hepatitis C virus hypervariable region 1 reveals no correlation between genetic heterogeneity and antiviral treatment outcomeAccurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand biasNext-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombinationSpouse-to-Spouse Transmission and Evolution of Hypervariable Region 1 and 5' Untranslated Region of Hepatitis C Virus Analyzed by Next-Generation SequencingDelineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.Ultradeep pyrosequencing of hepatitis C virus hypervariable region 1 in quasispecies analysis.Ultra-deep sequencing for the analysis of viral populations.MinVar: A rapid and versatile tool for HIV-1 drug resistance genotyping by deep sequencing.HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model.Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains.Prevalence and predictors for homo- and heterosubtypic antibodies against influenza a virus.Finite size corrections to random Boolean networksForcing reversibility in the no-strand-bias substitution model allows for the theoretical and practical identifiability of its 5 parameters from pairwise DNA sequence comparisonsDeep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correctionHepatitis C virus (HCV) genotype 1b displays higher genetic variability of hypervariable region 1 (HVR1) than genotype 3
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27268092100
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0000-0002-9082-8607