BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. - Test2 - elhamkhani - TriplyDB

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

http://www.wikidata.org/entity/Q42552965

about

Regulon-specific control of transcription elongation across the yeast genome Mutations in many genes affect aggressive behavior in Drosophila melanogaster Transcriptional adaptations following exercise in thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy Blast2GO: A comprehensive suite for functional analysis in plant genomics Pseudopodium-enriched atypical kinase 1 regulates the cytoskeleton and cancer progression [corrected].The forkhead transcription factor Hcm1 promotes mitochondrial biogenesis and stress resistance in yeast.SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer Different Mi-2 complexes for various developmental functions in Caenorhabditis elegans The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors Gene expression changes in female zebrafish (Danio rerio) brain in response to acute exposure to methylmercury Spatial mapping of the neurite and soma proteomes reveals a functional Cdc42/Rac regulatory network COTRASIF: conservation-aided transcription-factor-binding site finder.GOAL: a software tool for assessing biological significance of genes groups.Whole transcriptome analysis of a reversible neurodegenerative process in Drosophila reveals potential neuroprotective genes.In silico analysis of gastric carcinoma Serial Analysis of Gene Expression libraries reveals different profiles associated with ethnicity Pathway and network approaches for identification of cancer signature markers from omics data.Babelomics 5.0: functional interpretation for new generations of genomic data.Prolonged application of high fluid shear to chondrocytes recapitulates gene expression profiles associated with osteoarthritis.Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival.Next station in microarray data analysis: GEPAS.FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments Statistical similarities between transcriptomics and quantitative shotgun proteomics data.ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data GEPAS, a web-based tool for microarray data analysis and interpretation.Bioinformatic tools for inferring functional information from plant microarray data II: Analysis beyond single gene.Significance analysis of spectral count data in label-free shotgun proteomics From genes to functional classes in the study of biological systems.Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates.From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis High rate of recent transposable element-induced adaptation in Drosophila melanogaster Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees.A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips.Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages.Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation.Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks.Expression map of the human exome in CD34+ cells and blood cells: increased alternative splicing in cell motility and immune response genes.Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction.Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila A complex role for FGF-2 in self-renewal, survival, and adhesion of human embryonic stem cells.

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BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

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BABELOMICS: a systems biology ...... n of genome-scale experiments.

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Fátima Al-Shahrour

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Javier Vera

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Joaquín Tárraga

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Lucía Conde

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P2860

Towards a proteome-scale map of the human protein–protein interaction network

Gene ontology: tool for the unification of biology

A human protein-protein interaction network: a resource for annotating the proteome

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

The Universal Protein Resource (UniProt): an expanding universe of protein information.

MATCH: A tool for searching transcription factor binding sites in DNA sequences

InterPro, progress and status in 2005

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

Recent additions and improvements to the Onto-Tools.

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10.1093/NAR/GKL172

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Web Server issue

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34

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Joaquín Dopazo

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2006-07-01T00:00:00Z

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6940870

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