about
Modeling infectious disease dynamics in the complex landscape of global healthAdaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C VirusAn evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1Transmitted drug resistance in the CFAR network of integrated clinical systems cohort: prevalence and effects on pre-therapy CD4 and viral loadInferring the source of transmission with phylogenetic dataAssigning and visualizing germline genes in antibody repertoiresSampling through time and phylodynamic inference with coalescent and birth-death modelsOutbreakTools: a new platform for disease outbreak analysis using the R softwareHyPhy: hypothesis testing using phylogeniesDatamonkey: rapid detection of selective pressure on individual sites of codon alignmentsDatamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biologyAssessing the use of hospital staff influenza-like absence (ILA) for enhancing hospital preparedness and national surveillance.Adaptation to different human populations by HIV-1 revealed by codon-based analysesEvolutionary interactions between N-linked glycosylation sites in the HIV-1 envelopeAn evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope.Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.Phenotypic hypersusceptibility to multiple protease inhibitors and low replicative capacity in patients who are chronically infected with human immunodeficiency virus type 1.Evolution of envelope sequences of human immunodeficiency virus type 1 in cellular reservoirs in the setting of potent antiviral therapy.Viral phylodynamics and the search for an 'effective number of infections'.HIV prevalence and demographic determinants of unprotected anal sex and HIV testing among men who have sex with men in Beirut, Lebanon.Eight challenges in phylodynamic inference.A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.Dynamics and evolution of HIV-1 during structured treatment interruptions.Respondent driven sampling: determinants of recruitment and a method to improve point estimation.Genomic characterization of two novel HIV-1 second-generation recombinant forms among men who have sex with men in Beijing, China.Evaluation of the role of location and distance in recruitment in respondent-driven sampling.A random effects branch-site model for detecting episodic diversifying selection.Molecular and contextual markers of hepatitis C virus and drug abuse.Evaluation of respondent-driven sampling.Genetic drift and within-host metapopulation dynamics of HIV-1 infectionMapping protease inhibitor resistance to human immunodeficiency virus type 1 sequence polymorphisms within patients.High-risk sexual and drug using behaviors among male injection drug users who have sex with men in 2 Mexico-US border citiesPersistence of transmitted drug resistance among subjects with primary human immunodeficiency virus infection.A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.Immune-driven recombination and loss of control after HIV superinfection.Using sexual affiliation networks to describe the sexual structure of a population.Modelling tree shape and structure in viral phylodynamics.CCL3L1-CCR5 genotype influences durability of immune recovery during antiretroviral therapy of HIV-1-infected individualsEstimating selection pressures on HIV-1 using phylogenetic likelihood models.A public health model for the molecular surveillance of HIV transmission in San Diego, California
P50
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P50
description
hulumtues
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researcher
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wetenschapper
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հետազոտող
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name
Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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type
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Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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prefLabel
Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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Simon Frost
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P1053
F-3648-2010
P106
P1960
DhFI1wUAAAAJ
P21
P2456
P31
P3829
P496
0000-0002-5207-9879