The Copa Indonesia 2006 final was a football match which was played on 16 September 2006. It was the second final of the Piala Indonesia. The match was played at the Delta Stadium in Sidoarjo and was contested by Persipura Jayapura of Papua and Arema Malang from East Java. For Arema, this was the second appearance in the final of the Piala Indonesia tournament, after consecutive Piala Indonesia finals in 2005, with two trophies being won in 2005. Persipura was a debutant of the final stage. The winners entered the group stage of the 2007 AFC Champions League.