Structured RNAs in the ENCODE selected regions of the human genome - Wikidata - thesis-toulmin - TriplyDB

Structured RNAs in the ENCODE selected regions of the human genome

Structured RNAs in the ENCODE selected regions of the human genome

http://www.wikidata.org/entity/Q24673501

about

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project The GENCODE pseudogene resource What does our genome encode?Widespread purifying selection on RNA structure in mammals Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures PRINS, a primate-specific long non-coding RNA, plays a role in the keratinocyte stress response and psoriasis pathogenesis Decoding mechanisms by which silent codon changes influence protein biogenesis and function Comparative genomics as a tool to understand evolution and disease Solving nucleic acid structures by molecular replacement: examples from group II intron studies Computational analysis of noncoding RNAs Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals The Landscape of long noncoding RNA classification From consensus structure prediction to RNA gene finding Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function Structure-based whole-genome realignment reveals many novel noncoding RNAs The tedious task of finding homologous noncoding RNA genes The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes.Computational RNomics of drosophilids.Conservation and implications of eukaryote transcriptional regulatory regions across multiple species.TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes Detection of RNA structures in porcine EST data and related mammals.Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins Strategies for measuring evolutionary conservation of RNA secondary structures.Dinucleotide controlled null models for comparative RNA gene prediction.Conserved secondary structures in Aspergillus.A Review on Recent Computational Methods for Predicting Noncoding RNAs.Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.Integration of expressed sequence tag data flanking predicted RNA secondary structures facilitates novel non-coding RNA discovery.Functional interactions among microRNAs and long noncoding RNAs.Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes.Identification and comparative analysis of ncRNAs in human, mouse and zebrafish indicate a conserved role in regulation of genes expressed in brain Generation of a neuro-specific microarray reveals novel differentially expressed noncoding RNAs in mouse models for neurodegenerative diseases

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Structured RNAs in the ENCODE selected regions of the human genome

http://www.wikidata.org/entity/Q24673501

description

2007 nî lūn-bûn

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2007 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2007 թվականի հունիսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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name

Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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type

label

Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Structured RNAs in the ENCODE selected regions of the human genome

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Genome Research

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Structured RNAs in the ENCODE selected regions of the human genome

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P2093

Claudia Stocsits

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Manja Lindemeyer

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Michael Snyder

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P2860

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Identification and classification of conserved RNA secondary structures in the human genome

GENCODE: producing a reference annotation for ENCODE

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Distinct RNA motifs are important for coactivation of steroid hormone receptors by steroid receptor RNA activator (SRA).

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

Noncoding RNA gene detection using comparative sequence analysis

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852-64

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scholarly article

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10.1101/GR.5650707

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6

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17

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Stylianos Antonarakis

Roderic Guigó i Serra

Peter F. Stadler

Alexandre Reymond

Philipp Kapranov

Stefan Washietl

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2007-06-01T00:00:00Z

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6269160

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17568003

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1891344

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