Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure - Wikidata - thesis-toulmin - TriplyDB

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

http://www.wikidata.org/entity/Q24548806

about

The genetic signatures of noncoding RNAs The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering RNAstructure: software for RNA secondary structure prediction and analysis Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences Long noncoding RNA in genome regulation: prospects and mechanisms WAR: Webserver for aligning structural RNAs PARTS: probabilistic alignment for RNA joinT secondary structure prediction Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles Complex architecture and regulated expression of the Sox2ot locus during vertebrate development Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments Structured RNAs in the ENCODE selected regions of the human genome Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures Long non-coding RNAs as regulators of the endocrine system Keeping abreast with long non-coding RNAs in mammary gland development and breast cancer Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs From consensus structure prediction to RNA gene finding Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures Structured RNAs and synteny regions in the pig genome LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search MicroRNA discovery by similarity search to a database of RNA-seq profiles RNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs.Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes Detection of RNA structures in porcine EST data and related mammals.Shape based indexing for faster search of RNA family databases.Considerations in the identification of functional RNA structural elements in genomic alignments A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes.Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.How accurately is ncRNA aligned within whole-genome multiple alignments?Strategies for measuring evolutionary conservation of RNA secondary structures.Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment.Dinucleotide controlled null models for comparative RNA gene prediction.An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA.Robust and accurate prediction of noncoding RNAs from aligned sequences Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.The sequence, structure and evolutionary features of HOTAIR in mammals From structure prediction to genomic screens for novel non-coding RNAs.

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P2860

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

http://www.wikidata.org/entity/Q24548806

description

2006 nî lūn-bûn

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2006 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2006 թվականի հուլիսին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Thousands of corresponding hum ...... e contain common RNA structure

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Genome Research

P1476

Thousands of corresponding hum ...... e contain common RNA structure

@en

P2093

Elfar Torarinsson

http://www.w3.org/2001/XMLSchema#string

Jakob H Havgaard

http://www.w3.org/2001/XMLSchema#string

Milena Sawera

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P2860

Noncoding RNA gene detection using comparative sequence analysis

Rfam: an RNA family database

BLAT--the BLAST-like alignment tool

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription

Basic local alignment search tool

Primer3 on the WWW for general users and for biologist programmers

The transcriptional landscape of the mammalian genome

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

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885-9

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scholarly article

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5021925

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10.1101/GR.5226606

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7

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16

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Merete Fredholm

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2006-07-01T00:00:00Z

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7032301

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1484455

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