eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences - Wikidata - thesis-toulmin - TriplyDB

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

http://www.wikidata.org/entity/Q30002335

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Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development Architecture of the yeast Elongator complex HieranoiDB: a database of orthologs inferred by Hieranoid Sticky Genomes: Using NGS Evidence to Test Hybrid Speciation Hypotheses Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data.Capturing One of the Human Gut Microbiome's Most Wanted: Reconstructing the Genome of a Novel Butyrate-Producing, Clostridial Scavenger from Metagenomic Sequence Data.Metaproteomic data analysis at a glance: advances in computational microbial community proteomics.Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.-Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis.Co-occurring protein phosphorylation are functionally associated.Expression, Localization of SUMO-1, and Analyses of Potential SUMOylated Proteins in Bubalus bubalis Spermatozoa.Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae).Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.Protein-protein binding selectivity and network topology constrain global and local properties of interface binding networks.The gut microbiome of healthy Japanese and its microbial and functional uniqueness.MOCAT2: a metagenomic assembly, annotation and profiling framework The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer.Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes Probing the diversity of healthy oral microbiome with bioinformatics approaches.Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients.Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.Identification of candidate infection genes from the model entomopathogenic nematode Heterorhabditis bacteriophora proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family.Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of Aedes aegypti Bacterial protein meta-interactomes predict cross-species interactions and protein function.Systematic identification of phosphorylation-mediated protein interaction switches.The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling.The multiple evolutionary origins of the eukaryotic N-glycosylation pathway.Wolbachia Endosymbionts Modify Drosophila Ovary Protein Levels in a Context-Dependent Manner.Functional Annotations of Paralogs: A Blessing and a Curse A computational interactome and functional annotation for the human proteome.Spatial distribution of planktonic bacterial and archaeal communities in the upper section of the tidal reach in Yangtze River.The complete genome sequence of the yogurt isolate Streptococcus thermophilus ACA-DC 2 Bioengineering a bacterial pathogen to assemble its own particulate vaccine capable of inducing cellular immunity.Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology.Characterization of Brucella abortus mutant strain Δ22915, a potential vaccine candidate.

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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

http://www.wikidata.org/entity/Q30002335

description

2015 nî lūn-bûn

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2015 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2015 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年论文

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name

eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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Nucleic Acids Research

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eggNOG 4.5: a hierarchical ort ...... rokaryotic and viral sequences

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Christian von Mering

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Davide Heller

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Mathias C. Walter

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Michael Kuhn

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P2860

ETE: a python Environment for Tree Exploration

Testing the ortholog conjecture with comparative functional genomic data from mammals

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

The COG database: an updated version includes eukaryotes

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

How confident can we be that orthologs are similar, but paralogs differ?

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

Data, information, knowledge and principle: back to metabolism in KEGG

Orthology prediction methods: a quality assessment using curated protein families

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways

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D286-D293

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scholarly article

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687671

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10.1093/NAR/GKV1248

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D1

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44

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Lars Juhl Jensen

Damian Szklarczyk

Jaime Huerta-Cepas

Kristoffer Forslund

Shinichi Sunagawa

Helen Victoria Cook

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2015-11-17T00:00:00Z

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284176030

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26582926

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4702882

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