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Analyses of pig genomes provide insight into porcine demography and evolutionPigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structureUnifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsSemiautomated improvement of RNA alignmentsThe FOLDALIGN web server for pairwise structural RNA alignment and mutual motif searchThe tmRDB and SRPDB resources.Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese PigsEmerging applications of read profiles towards the functional annotation of the genomeRNA interactions in the 5' region of the HIV-1 genomeMapping and expression studies of the mir17-92 cluster on pig chromosome 11Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%Differential and coherent processing patterns from small RNAsStructured RNAs and synteny regions in the pig genomeMicroRNA discovery by similarity search to a database of RNA-seq profilesRNAsnp: efficient detection of local RNA secondary structure changes induced by SNPs.Sequence and expression analysis of gaps in human chromosome 20The tedious task of finding homologous noncoding RNA genesMultiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAsProtein-driven inference of miRNA-disease associationsNeural Networks and Cellular Automata ComplexityA QUANTITATIVE STUDY OF PRUNING BY OPTIMAL BRAIN DAMAGESNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosidesDetection of RNA structures in porcine EST data and related mammals.Linkage mapping of gene-associated SNPs to pig chromosome 11.Multiple structural alignment and clustering of RNA sequences.Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tagsEST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues.Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.A study of alternative splicing in the pigFrom structure prediction to genomic screens for novel non-coding RNAs.Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brainRILogo: visualizing RNA-RNA interactions.Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniaeProfiling of ribose methylations in RNA by high-throughput sequencing.Finding the most significant common sequence and structure motifs in a set of RNA sequencesDiscovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencingSpatially conserved regulatory elements identified within human and mouse Cd247 gene using high-throughput sequencing data from the ENCODE project.Transcriptomic landscape of lncRNAs in inflammatory bowel disease.
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0000-0001-5823-4000