Protein 3D structure computed from evolutionary sequence variation - Wikidata - wikimedia - TriplyDB

Protein 3D structure computed from evolutionary sequence variation

Protein 3D structure computed from evolutionary sequence variation

http://www.wikidata.org/entity/Q21090966

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Sequence co-evolution gives 3D contacts and structures of protein complexes Three-dimensional structures of membrane proteins from genomic sequencing Sequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamics Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models Applications of targeted proteomics in systems biology and translational medicine Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery Integrated analysis of residue coevolution and protein structure in ABC transporters Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance From residue coevolution to protein conformational ensembles and functional dynamics.Probabilistic grammatical model for helix‐helix contact site classification Deciphering membrane protein structures from protein sequences Molecular replacement: tricks and treats A structural model of the active ribosome-bound membrane protein insertase YidC Structural basis for amino acid export by DMT superfamily transporter YddG Constraint methods that accelerate free-energy simulations of biomolecules HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment Prediction of contact residue pairs based on co-substitution between sites in protein structures Towards structural systems pharmacology to study complex diseases and personalized medicine Global quantitative modeling of chromatin factor interactions Structure, dynamics and implied gating mechanism of a human cyclic nucleotide-gated channel Protein sectors: statistical coupling analysis versus conservation Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 Chaperones Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus Achievements and challenges in structural bioinformatics and computational biophysics Structural constraints identified with covariation analysis in ribosomal RNA Computational protein design quantifies structural constraints on amino acid covariation Structure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions that Mediate Homophilic Specificity Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4 Protein structure determination by combining sparse NMR data with evolutionary couplings Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences Protein structure prediction from sequence variation PconsFold: improved contact predictions improve protein models FreeContact: fast and free software for protein contact prediction from residue co-evolution Evaluation of residue-residue contact prediction in CASP10 Solution structure of a soluble fragment derived from a membrane protein by shotgun proteolysis.A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins Predicting functionally informative mutations in Escherichia coli BamA using evolutionary covariance analysis.Network deconvolution as a general method to distinguish direct dependencies in networks One contact for every twelve residues allows robust and accurate topology-level protein structure modeling

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P2860

Protein 3D structure computed from evolutionary sequence variation

http://www.wikidata.org/entity/Q21090966

description

2011 nî lūn-bûn

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2011 թվականին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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type

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D Structure Computed from Evolutionary Sequence Variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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Protein 3D structure computed from evolutionary sequence variation

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JOURNAL.PONE.0028766

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Protein 3D structure computed from evolutionary sequence variation

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Lucy J Colwell

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Robert Sheridan

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Thomas A Hopf

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P2860

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

Disentangling direct from indirect co-evolution of residues in protein alignments

Phylogenetic analysis of 277 human G-protein-coupled receptors as a tool for the prediction of orphan receptor ligands.

How frequent are correlated changes in families of protein sequences?

NMR structure determination for larger proteins using backbone-only data

I-TASSER: a unified platform for automated protein structure and function prediction

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

The Pfam protein families database

LGA: A method for finding 3D similarities in protein structures

Weak pairwise correlations imply strongly correlated network states in a neural population

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10.1371/JOURNAL.PONE.0028766

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12

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Riccardo Zecchina

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51872808

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22163331

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protein structure

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3233603

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