Overview of the protein-protein interaction annotation extraction task of BioCreative II - Wikidata - wikimedia - TriplyDB

Overview of the protein-protein interaction annotation extraction task of BioCreative II

Overview of the protein-protein interaction annotation extraction task of BioCreative II

http://www.wikidata.org/entity/Q21183901

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PubMed and beyond: a survey of web tools for searching biomedical literature A review on computational systems biology of pathogen-host interactions GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains Text mining for the biocuration workflow Integrated bio-entity network: a system for biological knowledge discovery Extraction of pharmacokinetic evidence of drug-drug interactions from the literature Automated detection of discourse segment and experimental types from the text of cancer pathway results sections Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II BioEve Search: A Novel Framework to Facilitate Interactive Literature Search SR4GN: a species recognition software tool for gene normalization How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience U-Compare bio-event meta-service: compatible BioNLP event extraction services LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships Automatic extraction of angiogenesis bioprocess from text Enhancing navigation in biomedical databases by community voting and database-driven text classification OntoGene in BioCreative II The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text Construction of an annotated corpus to support biomedical information extraction Community challenges in biomedical text mining over 10 years: success, failure and the future.Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.The textual characteristics of traditional and Open Access scientific journals are similar.BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.ChemEx: information extraction system for chemical data curation.A robust data-driven approach for gene ontology annotation.Self-training in significance space of support vectors for imbalanced biomedical event data BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature Extraction of data deposition statements from the literature: a method for automatically tracking research results.A Novel Sample Selection Strategy for Imbalanced Data of Biomedical Event Extraction with Joint Scoring Mechanism.A realistic assessment of methods for extracting gene/protein interactions from free text.Looking at cerebellar malformations through text-mined interactomes of mice and humans LINNAEUS: a species name identification system for biomedical literature.Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D Learning an enriched representation from unlabeled data for protein-protein interaction extraction A comprehensive benchmark of kernel methods to extract protein-protein interactions from literature BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences.A linguistic rule-based approach to extract drug-drug interactions from pharmacological documents Complex event extraction at PubMed scale A context-blocks model for identifying clinical relationships in patient records.BC4GO: a full-text corpus for the BioCreative IV GO task.

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P2860

Overview of the protein-protein interaction annotation extraction task of BioCreative II

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Overview of the protein-protein interaction annotation extraction task of BioCreative II

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An evaluation of human protein-protein interaction data in the public domain

MINT: the Molecular INTeraction database

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

Reactome: a knowledgebase of biological pathways

Human protein reference database--2006 update

Evaluation of BioCreAtIvE assessment of task 2

MIPS: analysis and annotation of genome information in 2007

OntoGene in BioCreative II

ROCR: visualizing classifier performance in R

IntAct--open source resource for molecular interaction data

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