Text mining for the biocuration workflow - Wikidata - wikimedia - TriplyDB

Text mining for the biocuration workflow

Text mining for the biocuration workflow

http://www.wikidata.org/entity/Q28264766

about

Text mining resources for the life sciences.The BioGRID interaction database: 2015 update The BioGRID interaction database: 2013 update Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database Text-mining-assisted biocuration workflows in Argo Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements neXtA5: accelerating annotation of articles via automated approaches in neXtProt The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis Overview of the interactive task in BioCreative V Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases.Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources Assisting manual literature curation for protein-protein interactions using BioQRator RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information Closing the loop: from paper to protein annotation using supervised Gene Ontology classification Curation and analysis of multitargeting agents for polypharmacological modeling.Polypharmacology: drug discovery for the future.Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.Application of text-mining for updating protein post-translational modification annotation in UniProtKB GeneRIF indexing: sentence selection based on machine learning.Integrated module and gene-specific regulatory inference implicates upstream signaling networks CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations.Machine learning for biomedical literature triage Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature GOTA: GO term annotation of biomedical literature.BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.Text Mining for Precision Medicine: Bringing Structure to EHRs and Biomedical Literature to Understand Genes and Health.Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries.Building an efficient curation workflow for the Arabidopsis literature corpus.Systems biology in physiology: the vasopressin signaling network in kidney.The Comparative Toxicogenomics Database: update 2013.An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

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P2860

Text mining for the biocuration workflow

http://www.wikidata.org/entity/Q28264766

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2012 nî lūn-bûn

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Text mining for the biocuration workflow

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Text mining for the biocuration workflow

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Anne-Lise Veuthey

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Cathy H Wu

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Gully A P C Burns

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K Bretonnel Cohen

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P2860

Overview of the protein-protein interaction annotation extraction task of BioCreative II

The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

Automating document classification for the Immune Epitope Database

Textpresso: an ontology-based information retrieval and extraction system for biological literature

Taverna: a tool for building and running workflows of services

Structured digital abstract makes text mining easy

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)

BioLit: integrating biological literature with databases.

Integration of open access literature into the RCSB Protein Data Bank using BioLit.

Integrating text mining into the MGI biocuration workflow

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2012

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Alfonso Valencia

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Martin Krallinger

Anália Lourenço

Andrew Chatr-Aryamontri

Kevin Bretonnel Cohen

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