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Bioconductor: open software development for computational biology and bioinformatics

Bioconductor: open software development for computational biology and bioinformatics

http://www.wikidata.org/entity/Q21194861

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Flow cytometry bioinformatics Most "dark matter" transcripts are associated with known genes Global microRNA characterization reveals that miR-103 is involved in IGF-1 stimulated mouse intestinal cell proliferation Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Gene function in early mouse embryonic stem cell differentiation.Hypoxia-inducible C-to-U coding RNA editing downregulates SDHB in monocytes Predicting effective microRNA target sites in mammalian mRNAs Discovery and validation of new potential biomarkers for early detection of colon cancer Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909)Extinction of hepatitis C virus by ribavirin in hepatoma cells involves lethal mutagenesis Multi-targeted mechanisms underlying the endothelial protective effects of the diabetic-safe sweetener erythritol When is hub gene selection better than standard meta-analysis?Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kinetics Weighted change-point method for detecting differential gene expression in breast cancer microarray data Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis The active human gut microbiota differs from the total microbiota Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation Distinctive patterns of microRNA expression associated with karyotype in acute myeloid leukaemia A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni Foxp2 regulates gene networks implicated in neurite outgrowth in the developing brain Genomic and functional studies of Drosophila sex hierarchy regulated gene expression in adult head and nervous system tissues Scientific software development is not an oxymoron BAIT: Organizing genomes and mapping rearrangements in single cells A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme Cistrome: an integrative platform for transcriptional regulation studies Differential expression analysis for sequence count data PyCogent: a toolkit for making sense from sequence.Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray Genome-wide matching of genes to cellular roles using guilt-by-association models derived from single sample analysis Genetical genomic determinants of alcohol consumption in rats and humans MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells miR-449 inhibits cell proliferation and is down-regulated in gastric cancer Transcriptome analysis of germinating maize kernels exposed to smoke-water and the active compound KAR1 Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile Age-associated bidirectional modulation of gene expression in single identified R15 neuron of Aplysia Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens

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Bioconductor: open software development for computational biology and bioinformatics

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The Bioperl toolkit: Perl modules for the life sciences

Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

''R"--project for statistical computing

An extensible application for assembling annotation for genomic data.

Expression array annotation using the BioMediator biological data integration system and the BioConductor analytic platform.

Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival.

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