Presenting and exploring biological pathways with PathVisio - Wikidata - wikimedia - TriplyDB

Presenting and exploring biological pathways with PathVisio

Presenting and exploring biological pathways with PathVisio

http://www.wikidata.org/entity/Q21284199

about

Multi-targeted mechanisms underlying the endothelial protective effects of the diabetic-safe sweetener erythritol NetPath: a public resource of curated signal transduction pathways Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.An integrated signal transduction network of macrophage migration inhibitory factor PathVisio 3: an extendable pathway analysis toolbox Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future Polycomb protein family member CBX7 plays a critical role in cancer progression Concise review: stem cell-derived erythrocytes as upcoming players in blood transfusion High mobility group a proteins as tumor markers Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative Evaluation of database-derived pathway development for enabling biomarker discovery for hepatotoxicity Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment ROS stress resets circadian clocks to coordinate pro-survival signals Precise generation of systems biology models from KEGG pathways Alterations in hepatic one-carbon metabolism and related pathways following a high-fat dietary intervention Molecular pathways involved in prostate carcinogenesis: insights from public microarray datasets Differences in gene expression profiles between human preimplantation embryos cultured in two different IVF culture media Altered gene expression in human placentas after IVF/ICSI WikiPathways: building research communities on biological pathways Signaling network map of the aryl hydrocarbon receptor Mining biological pathways using WikiPathways web services The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation Advanced Running Performance by Genetic Predisposition in Male Dummerstorf Marathon Mice (DUhTP) Reveals Higher Sterol Regulatory Element-Binding Protein (SREBP) Related mRNA Expression in the Liver and Higher Serum Levels of Progesterone The systems biology format converter A network map of Interleukin-10 signaling pathway A knowledgebase resource for interleukin-17 family mediated signaling Whole transcriptome analysis reveals changes in expression of immune-related genes during and after bleaching in a reef-building coral Pathways with PathWhiz A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portal Path2Models: large-scale generation of computational models from biochemical pathway maps Integrated network analysis and effective tools in plant systems biology.Proteomic analysis of carbon concentrating chemolithotrophic bacteria Serratia sp. for sequestration of carbon dioxide t4 workshop report: Pathways of Toxicity A Signaling Network of Thyroid-Stimulating Hormone A pathway map of prolactin signaling A Bioinformatics Resource for TWEAK-Fn14 Signaling Pathway Multi-dimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses Pathway databases and tools for their exploitation: benefits, current limitations and challenges Owner controlled data exchange in nutrigenomic collaborations: the NuGO information network

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Presenting and exploring biological pathways with PathVisio

http://www.wikidata.org/entity/Q21284199

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BMC Bioinformatics

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WikiPathways: pathway editing for the people

HMDB: the Human Metabolome Database

Cytoscape: a software environment for integrated models of biomolecular interaction networks

ChEBI: a database and ontology for chemical entities of biological interest

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

DAVID: Database for Annotation, Visualization, and Integrated Discovery

Integration of biological networks and gene expression data using Cytoscape

Database resources of the National Center for Biotechnology Information

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.

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Alexander R. Pico

Kristina Hanspers

Martijn P van Iersel

Bruce R Conklin

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biological pathway

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