Path2Models: large-scale generation of computational models from biochemical pathway maps - Wikidata - wikimedia - TriplyDB

Path2Models: large-scale generation of computational models from biochemical pathway maps

Path2Models: large-scale generation of computational models from biochemical pathway maps

http://www.wikidata.org/entity/Q28652349

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Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools libChEBI: an API for accessing the ChEBI database Quantitative and logic modelling of molecular and gene networks Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction BioModels linked dataset BioModels: ten-year anniversary BioModels: Content, Features, Functionality, and Use Combining computational models, semantic annotations and simulation experiments in a graph database Integrated network analysis and effective tools in plant systems biology.Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks Integrative analysis of metabolic models - from structure to dynamics Reconstruction of genome-scale human metabolic models using omics data.ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis.Toward Community Standards and Software for Whole-Cell Modeling Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes.Improving collaboration by standardization efforts in systems biology.Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges.RobOKoD: microbial strain design for (over)production of target compounds.A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.Mimoza: web-based semantic zooming and navigation in metabolic networks.SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.Transparency in metabolic network reconstruction enables scalable biological discovery Integration and Validation of the Genome-Scale Metabolic Models of Pichia pastoris: A Comprehensive Update of Protein Glycosylation Pathways, Lipid and Energy Metabolism Modular modelling with Physiome standards.Information Visualization for Biological Data.MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.Applications of genome-scale metabolic network model in metabolic engineering.Critical assessment of genome-scale metabolic networks: the need for a unified standard.Mining databases for protein aggregation: a review.Modeling the Metabolism of Arabidopsis thaliana: Application of Network Decomposition and Network Reduction in the Context of Petri Nets Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle.The MYpop toolbox: Putting yeast stress responses in cellular context on single cell and population scales.Polyphasic analysis of an Azoarcus-Leptothrix-dominated bacterial biofilm developed on stainless steel surface in a gasoline-contaminated hypoxic groundwater.Discerning mechanistically rewired biological pathways by cumulative interaction heterogeneity statistics.A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models.

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Path2Models: large-scale generation of computational models from biochemical pathway maps

http://www.wikidata.org/entity/Q28652349

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2013 nî lūn-bûn

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2013 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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1752-0509-7-116

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BMC Systems Biology

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Path2Models: large-scale generation of computational models from biochemical pathway maps

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Andreas Zell

http://www.w3.org/2001/XMLSchema#string

Falk Schreiber

http://www.w3.org/2001/XMLSchema#string

Matthias Rall

http://www.w3.org/2001/XMLSchema#string

Mihai Glont

http://www.w3.org/2001/XMLSchema#string

Roland Keller

http://www.w3.org/2001/XMLSchema#string

Tobias Czauderna

http://www.w3.org/2001/XMLSchema#string

Wolfgang Müller

http://www.w3.org/2001/XMLSchema#string

P2860

WikiPathways: pathway editing for the people

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

Presenting and exploring biological pathways with PathVisio

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

KEGG: kyoto encyclopedia of genes and genomes

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

A protocol for generating a high-quality genome-scale metabolic reconstruction

SABIO-RK--database for biochemical reaction kinetics

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4835060

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10.1186/1752-0509-7-116

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1

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7

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Nicolas Le Novère

Henning Hermjakob

Martijn P van Iersel

Claudine Chaouiya

Julio Saez-Rodriguez

Nicolas Rodriguez

Michael Schubert

Sarah M Keating

P577

2013-11-01T00:00:00Z

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258248596

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24180668

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1307.7005

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computational biology

structural biology

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4228421

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