BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions - Wikidata - wikimedia - TriplyDB

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

http://www.wikidata.org/entity/Q21284353

about

A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043 A survey of metabolic databases emphasizing the MetaCyc family Systems biology of the structural proteome CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics BiGG Models: A platform for integrating, standardizing and sharing genome-scale models Software applications for flux balance analysis Current state of genome-scale modeling in filamentous fungi sybil – Efficient constraint-based modelling in R Using Genome-scale Models to Predict Biological Capabilities Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 FAME, the Flux Analysis and Modeling Environment Identification of functional differences in metabolic networks using comparative genomics and constraint-based models Reconstruction and in silico analysis of metabolic network for an oleaginous yeast, Yarrowia lipolytica Biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis MediaDB: a database of microbial growth conditions in defined media Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain CONSTRICTOR: constraint modification provides insight into design of biochemical networks Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition Path2Models: large-scale generation of computational models from biochemical pathway maps Computational approaches for microalgal biofuel optimization: a review WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions WholeCellKB: model organism databases for comprehensive whole-cell models Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli Redox balance is key to explaining full vs. partial switching to low-yield metabolism Linking genome-scale metabolic modeling and genome annotation Mechanistic systems modeling to guide drug discovery and development Reconciling a Salmonella enterica metabolic model with experimental data confirms that overexpression of the glyoxylate shunt can rescue a lethal ppc deletion mutant Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.Advances in network-based metabolic pathway analysis and gene expression data integration.Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.A Method to Constrain Genome-Scale Models with 13C Labeling Data.Critical assessment of human metabolic pathway databases: a stepping stone for future integration.Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets.Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes.

P2860

Q21202770-124DB2B2-2844-4BB6-8881-47E1AB4D3A25 Q21202780-12389A35-DF8A-46D0-90D8-AFEC2B1F7A55 Q24621464-29F4A751-2852-4137-87C5-84FD56D3732F Q24672160-AA590D39-9910-4ED2-9D65-A988B8660FCD Q24698579-38F9499B-DE7D-4146-90B0-866B08189EB6 Q24698676-7E6A44A0-B0F2-4F4D-9B41-7406857ACD64 Q26824185-FA743F4F-68EB-44CA-8F08-4198535CDD50 Q26851071-F3A501F7-2031-40A0-B376-ED1EA38CE147 Q27499049-AF569121-EDC2-45C2-BEA5-1F23CE3FD8D8 Q28085366-6AC015D7-5DC4-42A4-BA1A-3D7D7BCA5079 Q28246991-2991706B-F054-4E49-B5DF-A357805ACA60 Q28258452-8572B805-1B55-43B5-AC5F-FDD30CDF7BCF Q28483888-1FF0EF2F-B89A-4002-9DBD-5050D5EF8A7A Q28484256-AFB793E2-7E58-4747-B33A-58A8C0348DFC Q28539365-4E8B325D-6386-4608-8CC1-A29B581D7BDA Q28541647-49DC8A0A-4A94-462C-A9D0-2B2E92809E2F Q28544995-0B995D75-E5CE-4B24-A0B1-5ABA3D98C202 Q28545184-351C1886-F09E-4BC2-AE0E-2F0FEEC52D15 Q28550960-F71C85A7-899D-4511-BF20-20AE703AF1FF Q28551270-5BAC4556-5041-4463-8EE6-89E548D86A6E Q28551884-0DC87299-3BCD-4546-893A-9FCA93574B1F Q28635799-4DCE01BE-1E66-42A3-B50F-454E3A1E8C6D Q28652349-042CBE2B-3ABA-43E2-99B7-B84152462786 Q28654886-0C42E93B-7F39-440A-BCEF-4F500163EE08 Q28655717-044C342D-81F2-4CA3-9C2B-BB2A619BE29C Q28710199-389BDC71-BBCF-474C-AD4D-C9A86AADBCA0 Q28822192-7988FA21-25B3-4552-8859-2D6058BBD7B4 Q29304928-EC541835-FDF3-4272-89B1-2415AA8A5F4F Q30412056-3C70CEF6-220B-4B77-9734-5CECDB9F6762 Q30414988-2C8F6013-57C4-4EEE-B11E-EE4031FF083B Q30592724-D4CE3CA1-E720-49EA-9A7C-C2078C75A179 Q30710200-5CDD301B-210B-4420-B0E3-1C7AEBE7E7C0 Q30758202-8B0E13F5-D566-4A21-80B4-EA93D036777F Q30777076-09EE9BB7-61AD-4028-A4AE-D944F63FC60C Q30869900-3EFAF0A6-3F52-4A6A-94A1-1F09E2EA4A6C Q30990372-26A727DD-0C7D-4BBE-B01E-C12B7BD4569E Q30994004-D2093583-720A-4682-B144-2E51685CDD60 Q31039028-0408ED14-0453-46D3-8F70-C0D448ABD69E Q31119097-68C77BB8-C315-4B68-89C0-66F787434902 Q31148049-0C942D43-011E-400E-8AF9-E30F8220855A

P2860

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

http://www.wikidata.org/entity/Q21284353

description

2010 nî lūn-bûn

@nan

2010 թուականին հրատարակուած գիտական յօդուած

@hyw

2010 թվականին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@ast

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en-gb

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@nl

type

label

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@ast

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en-gb

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@nl

prefLabel

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@ast

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en-gb

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@nl

P1433

Q21284353-CE4B553A-91D3-4CA5-8F5C-62D2C3103F37

P1476

Q21284353-139D9793-38E5-44E8-9576-D3E4A75D10F6

P2093

Q21284353-A5D22D1E-214F-4064-BCB8-847F88E85F66

Q21284353-DBE0E77F-1C4F-4C94-A7F0-9FEA8C2A3E1C

P2860

Q21284353-057631C0-172E-4B8B-9C7A-432634683CD5

Q21284353-0CB655C6-5712-4463-8949-861B5F874CE4

Q21284353-0E789232-0E89-44AF-8273-1456D21BED55

Q21284353-0F8504A7-0B90-4B1A-B2BF-BC903FAD4053

Q21284353-112DE2B6-30CE-4B3F-8E1E-B1801A3D1228

Q21284353-1634C6E9-245B-40D1-89BA-15CF2C3AEDB0

Q21284353-194A4696-28E4-42F9-BC4C-3B384177B372

Q21284353-19896384-48AE-476C-8219-046BAC1A3A55

Q21284353-1E83DE26-9AAF-4DDA-AD89-56B1CAD8C420

Q21284353-1FD832B6-9775-4FB7-B7CE-4A303B53CA2A

P2888

Q21284353-800CCBEA-C0E8-4947-AEFD-A3C0F01121B5

P304

Q21284353-808604E7-AACA-4F69-AC37-368FFB37FF9A

P31

Q21284353-8D4A2724-6E59-44AC-A351-99BCDD898D87

P3181

Q21284353-2CBFEE38-95FA-4D57-9184-159421079788

P356

Q21284353-F5DA5715-C9CC-41B3-80A5-F4CDCA2CEE0D

P407

Q21284353-CE0E8D87-8807-45D1-B739-4C7879F97B15

P433

Q21284353-F66AEA34-E915-4D4B-A080-C3FC3BA2DD5D

P478

Q21284353-939A190D-4245-4AE7-807C-D2A5950F0C55

P50

Q21284353-806E53D4-2918-4C5B-8A84-4AFACD6D3DDF

Q21284353-C2D3D8EE-FBCD-4CC9-8A50-F70E4E8D1A3C

P577

Q21284353-C7DC906C-761F-460B-AFDD-0BD81B7D3159

P5875

Q21284353-9590AE06-C901-44CF-B46F-96FFCCFA9E51

P6179

Q21284353-5675D376-9418-4C20-B8C5-D0A49D1785DF

P698

Q21284353-206C8541-4154-4FE3-8694-47482390BE2A

P921

Q21284353-0865364D-2620-42F1-80FA-EEEC19F04116

Q21284353-0F4182B6-2D3F-4D91-A8C5-A67EBCF15EB4

P932

Q21284353-3C1A6073-82CD-4782-AE39-3FE39843AAD2

P3181

P356

1471-2105-11-213

P1433

BMC Bioinformatics

P1476

BiGG: a Biochemical Genetic an ...... cale metabolic reconstructions

@en

P2093

Jan Schellenberger

http://www.w3.org/2001/XMLSchema#string

Tom M Conrad

http://www.w3.org/2001/XMLSchema#string

P2860

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

The RAST Server: rapid annotations using subsystems technology

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

KEGG: Kyoto Encyclopedia of Genes and Genomes

The Universal Protein Resource (UniProt)

BRENDA, the enzyme database: updates and major new developments

A protocol for generating a high-quality genome-scale metabolic reconstruction

Entrez Gene: gene-centered information at NCBI

Global reconstruction of the human metabolic network based on genomic and bibliomic data

P2888

1471-2105-11-213

P304

213

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

1817452

http://www.w3.org/2001/XMLSchema#string

P356

10.1186/1471-2105-11-213

http://www.w3.org/2001/XMLSchema#string

P407

P433

1

http://www.w3.org/2001/XMLSchema#string

P478

11

http://www.w3.org/2001/XMLSchema#string

P50

Bernhard Palsson

Junyoung O Park

P577

2010-04-29T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

43350952

http://www.w3.org/2001/XMLSchema#string

P6179

1037674885

http://www.w3.org/2001/XMLSchema#string

P698

20426874

http://www.w3.org/2001/XMLSchema#string

P921

P932

2874806

http://www.w3.org/2001/XMLSchema#string