MetaCyc: a multiorganism database of metabolic pathways and enzymes - Wikidata - wikimedia - TriplyDB

MetaCyc: a multiorganism database of metabolic pathways and enzymes

MetaCyc: a multiorganism database of metabolic pathways and enzymes

http://www.wikidata.org/entity/Q24538678

about

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571 The human urine metabolome A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology e-Fungi: a data resource for comparative analysis of fungal genomes Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.Genomic analysis of "Elusimicrobium minutum," the first cultivated representative of the phylum "Elusimicrobia" (formerly termite group 1)ChEBI: a database and ontology for chemical entities of biological interest Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways Metabolic Engineering of Microalgal Based Biofuel Production: Prospects and Challenges Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants In Silico Constraint-Based Strain Optimization Methods: the Quest for Optimal Cell Factories STITCH: interaction networks of chemicals and proteins Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses Network integration and graph analysis in mammalian molecular systems biology Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery Reactome: a knowledge base of biologic pathways and processes New metrics for comparative genomics The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information Visual analysis of transcriptome data in the context of anatomical structures and biological networks Large-scale prediction of drug-target relationships CellCircuits: a database of protein network models.Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions.Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests.Resources for integrative systems biology: from data through databases to networks and dynamic system models.Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli PathExpress: a web-based tool to identify relevant pathways in gene expression data.The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions Systematic assignment of thermodynamic constraints in metabolic network models.A survey of orphan enzyme activities ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.Genome-scale models of bacterial metabolism: reconstruction and applications.

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P2860

MetaCyc: a multiorganism database of metabolic pathways and enzymes

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description

2006 nî lūn-bûn

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2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2006年の論文

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Nucleic Acids Research

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MetaCyc: a multiorganism database of metabolic pathways and enzymes

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Carol A Fulcher

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Christophe Tissier

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Hartmut Foerster

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John Ingraham

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John Pick

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Markus Krummenacker

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Pallavi Kaipa

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Peifen Zhang

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Rebecca Hopkinson

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Ron Caspi

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P2860

Computational prediction of human metabolic pathways from the complete human genome

The complete genome sequence of Francisella tularensis, the causative agent of tularemia

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

The Protein Data Bank

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.

AraCyc: a biochemical pathway database for Arabidopsis

EcoCyc: a comprehensive database resource for Escherichia coli

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

The Pathway Tools software

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4966046

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10.1093/NAR/GKJ128

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Database issue

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34

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