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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

http://www.wikidata.org/entity/Q24599569

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Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives Repetitive DNA and next-generation sequencing: computational challenges and solutions Transposable element detection from whole genome sequence data Transposable elements and their potential role in complex lung disorder Structural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectives Detection of Genomic Structural Variants from Next-Generation Sequencing Data PeSV-Fisher: identification of somatic and non-somatic structural variants using next generation sequencing data A genome-wide approach for detecting novel insertion-deletion variants of mid-range size Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil The genomic landscape of polymorphic human nuclear mitochondrial insertions Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue.RetroSeq: transposable element discovery from next-generation sequencing data A model-based clustering method for genomic structural variant prediction and genotyping using paired-end sequencing data Unraveling genomic variation from next generation sequencing data.Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches.Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Identification of copy number variants in whole-genome data using Reference Coverage Profiles.G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.Detecting non-allelic homologous recombination from high-throughput sequencing data.CRCDA--Comprehensive resources for cancer NGS data analysis.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.Sprites: detection of deletions from sequencing data by re-aligning split reads.Insights into the genetic structure and diversity of 38 South Asian Indians from deep whole-genome sequencing Visualization and probability-based scoring of structural variants within repetitive sequences.SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data.Haplotype-resolved genome sequencing of a Gujarati Indian individual.TEMP: a computational method for analyzing transposable element polymorphism in populations.Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes Sequencing of pooled DNA samples (Pool-Seq) uncovers complex dynamics of transposable element insertions in Drosophila melanogaster An integrative probabilistic model for identification of structural variation in sequencing data.PAIR: polymorphic Alu insertion recognition.Tangram: a comprehensive toolbox for mobile element insertion detection.

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Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

http://www.wikidata.org/entity/Q24599569

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2010 nî lūn-bûn

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2010 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2010 թվականի հունիսին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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Next-generation VariationHunte ...... transposon insertion discovery

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Next-generation VariationHunte ...... transposon insertion discovery

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Next-generation VariationHunte ...... transposon insertion discovery

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Faraz Hach

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Iman Hajirasouliha

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The diploid genome sequence of an individual human

Death and resurrection of the human IRGM gene

Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer

Structural variation in the human genome

Fine-scale structural variation of the human genome

Mapping and sequencing of structural variation from eight human genomes

Accurate whole human genome sequencing using reversible terminator chemistry

Paired-end mapping reveals extensive structural variation in the human genome

End-sequence profiling: sequence-based analysis of aberrant genomes

Base-calling of automated sequencer traces using phred. II. Error probabilities

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